Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0663
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 29 0.56
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 27 1.7
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 25 5.2
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 6.9
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 6.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 6.9
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 25 6.9
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 25 9.1
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 25 9.1
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 25 9.1
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 28.7 bits (61), Expect = 0.56
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 240 ASRALSGVVISFFTACVCATHFTVTFSNNLIAATSPYS 127
ASR + G+V FF + VC ++++T NL+ T+ S
Sbjct: 445 ASRLVVGIV-HFFFSLVCVVYYSITPLRNLVGFTTKRS 481
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 1.7
Identities = 22/87 (25%), Positives = 39/87 (44%)
Frame = +1
Query: 247 AYKKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDDE 426
A+ + + + NY D+E + E++ + Y+ L+R LG+ D+ +
Sbjct: 504 AHSRLSSVRRNVNYTDEEIMGANLELLTEPDAYD--LVRL-----LGQYPDVLKNAFRFQ 556
Query: 427 EMDTNSAYYVRLRTLVSKMEMIRWLIG 507
E T Y +L VSK+ I W+ G
Sbjct: 557 ETSTVVTYLFKLTHAVSKLYDILWVRG 583
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 5.2
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +2
Query: 137 DVAAIKLLEKVTVKCVAQTHAVKK-----LITTPDRALDAEMLTRNKI*WKP*QTIEIRK 301
DVA I LEKV K V T+ +KK L+ P + A+ +++ K+ KP T+E+++
Sbjct: 48 DVAEIAGLEKVQGKPVLTTNDLKKESNVFLVRLPP-GMSADQISQLKVGSKP--TVELKQ 104
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 435 HKQCILCTPSNLGLEDGD 488
HK C CT + GLE D
Sbjct: 41 HKDCFCCTKCDKGLEHSD 58
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.0 bits (52), Expect = 6.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 262 NIMEALTNYRDKETSLRHFEMILQEK--QYEHNL 357
N++++ TNY + T L LQEK Y++NL
Sbjct: 507 NVLDSCTNYVGRYTFLNELFEYLQEKTTYYKNNL 540
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.0 bits (52), Expect = 6.9
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +1
Query: 244 DAYKKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDD 423
+A ++N + + ++ D+E S R IL+ K + L AE LGE + ++ +++ D
Sbjct: 1020 EAVTQKNYLLSQQSHDDRE-SFRERMQILKSK---YGALNAERAGLLGECKQLENSITKD 1075
Query: 424 EE 429
+E
Sbjct: 1076 KE 1077
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 486 LHLRDQGSKAYIICTVCVHFLVITDCCLHIPQFTERFI 373
+HL Q S Y + T C LV++ +P F + F+
Sbjct: 262 VHLLSQKSLPYSLTTFCASILVLS--FFQLPLFADHFL 297
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -1
Query: 300 FLISIVCQGFHYILFLVSISASRALSGVVISFFTACVCATHFTVTFSNNLIA 145
F I+ +CQ Y+L+L +S S+ + G +F A + F++ F + + +
Sbjct: 177 FWITNMCQQIQYLLWLTPLS-SKTIVGYSWPYFIAKILFA-FSIIFHSGVFS 226
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +1
Query: 298 ETSLRHF--EMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSD 420
E+ L+ F + LQE + E+++L E++ ++ LRD +++D
Sbjct: 205 ESELQTFFTQQQLQELEQENDVLLQEFEHTMERLRDTGKSLAD 247
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 316 FEMILQEKQYEHNLLRAEWDKSLGELR 396
F ++L+++QY H + E+DK E R
Sbjct: 202 FSLLLKDQQYLHRQVFFEYDKKFVEPR 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,862
Number of Sequences: 5004
Number of extensions: 42741
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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