BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0663 (525 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562... 34 0.080 02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20... 31 0.57 03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606... 31 0.75 02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 29 1.7 12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337... 29 3.0 06_01_0603 - 4350124-4350590,4350995-4353608 28 5.3 04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 28 5.3 03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 28 5.3 10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 27 7.0 01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 27 7.0 03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321... 27 9.2 >04_03_0616 - 18052596-18053779,18053935-18054099,18056236-18056260, 18057259-18057312,18057354-18057619,18058633-18059371 Length = 810 Score = 33.9 bits (74), Expect = 0.080 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +1 Query: 199 CKKTYNDTG---QSSGC*DAYKKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAE 369 CKK Y S+GC ++ IM R+K+ LR + + E + +H+ LRA+ Sbjct: 229 CKKGYQGNPYLQDSNGCQGSFLHCQIMSLSARSREKQVKLRRMSLCVPEGRAQHSWLRAK 288 Query: 370 WDK 378 K Sbjct: 289 GTK 291 >02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-203916, 204264-204305,204437-204589,206559-207221 Length = 354 Score = 31.1 bits (67), Expect = 0.57 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = +1 Query: 226 QSSGC*DAYKKQN-IMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDM 402 + S C KKQ +M+ + R+KE +L M+L++ + L + W S+GEL++ Sbjct: 45 EKSLCSIRQKKQKMLMDQILELREKEMNLLKENMVLRD---QCKALSSPWSTSVGELKNK 101 Query: 403 KA 408 +A Sbjct: 102 QA 103 >03_05_1011 + 29658144-29658310,29659531-29659676,29660526-29660602, 29660682-29660804,29661817-29661924,29661995-29662075, 29662157-29662309,29662469-29662540,29662745-29662863, 29662958-29663071,29663176-29663221,29664865-29664933, 29665662-29665808,29666410-29666706 Length = 572 Score = 30.7 bits (66), Expect = 0.75 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Frame = -1 Query: 327 YHLKMTKTGFLISIVCQGFHYIL--FLVSISASRALSGVVISFFTACVC---ATHFTVTF 163 YH +T G+ ++V G H ++ FL + + R+L+ ++ + A A FT+ + Sbjct: 334 YHFDLTTGGYR-ALVFSGDHDLILPFLSTQAWIRSLNFSIVDEWRAWHVDGQAAGFTILY 392 Query: 162 SNNLIAATSPYSLMISSVL 106 +NNL AT SL +S+ L Sbjct: 393 ANNLTFATVKVSLFLSTSL 411 >02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410, 6728534-6728634,6728740-6728808,6729180-6729220, 6729992-6730836,6730924-6731027,6731479-6732354 Length = 775 Score = 29.5 bits (63), Expect = 1.7 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Frame = +3 Query: 30 YLYSPPNLSF*ER-----NLYH*LHK*RNKSRPKKSLKNTV-M*QLSNY*RRSL*NALHK 191 Y+ PPNLS +LY LH+ ++ + LK + + + NY S +H+ Sbjct: 663 YVTQPPNLSILTEYLPRGSLYRLLHRPNSQIDETRRLKMALDVAKGMNYLHASHPTIVHR 722 Query: 192 HML*KNL*RHRTELWMLRCLQETKYNGSLD 281 + NL + W+++CL ET++ +LD Sbjct: 723 DLKSPNLLVDKN--WVVKCLHETEHLDTLD 750 >12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217, 3377337-3377379,3378304-3380332 Length = 1022 Score = 28.7 bits (61), Expect = 3.0 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = +1 Query: 364 AEWDKSLGELRDMKAAVSDDEEMDTNSAYYVRLRTLVSKMEMIRWL-IGN 510 AE +LG+L+++ V ++M N+ +L + +SKM +RWL IGN Sbjct: 789 AEEIGALGQLQELAIFVDTGKKM--NNGVVKKLASSLSKMYSLRWLDIGN 836 >06_01_0603 - 4350124-4350590,4350995-4353608 Length = 1026 Score = 27.9 bits (59), Expect = 5.3 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -1 Query: 261 LFLVSISASRALSGVVISFFTACVCATHFTVTFSNNLIAATSPYS 127 L+ + +S +R G+ + F C C V +NN +A PYS Sbjct: 153 LYFLDLSGNRLSGGIPATLF--CNCTALQYVDLANNSLAGDIPYS 195 >04_04_0717 - 27525117-27525248,27525384-27525549,27525629-27525831, 27525911-27526048,27526642-27526725,27526864-27526950, 27527048-27527120,27527169-27527432,27527692-27527768, 27527886-27527957,27528049-27528209,27528238-27528484, 27528588-27528707,27528846-27528929,27529205-27529341, 27529689-27529856,27530093-27530317,27530865-27530952, 27531033-27531194,27532797-27532919 Length = 936 Score = 27.9 bits (59), Expect = 5.3 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Frame = +1 Query: 250 YKKQNIMEALTNYRDKETSLRHFEMILQEKQYEHN----LLRAEWDKSLGELRDMKAAVS 417 YK Q + E L ++ + +L + L+EKQ HN L+ + W++ + +L+ S Sbjct: 49 YKNQKLSEQLEAHKFEYRALENKFAGLKEKQRTHNETLSLVNSSWEQLVADLKSRSFCKS 108 Query: 418 DDEEMDTNSAY 450 S + Sbjct: 109 GSPNSSPGSGH 119 >03_05_1139 - 30689514-30689609,30689795-30689956,30691245-30691299, 30691695-30691959,30692749-30692959,30693542-30693721, 30693802-30693899,30694211-30694277,30694897-30694963, 30695335-30695447,30695988-30696032,30696116-30696223, 30696582-30696791,30697464-30697670,30697786-30697875, 30698168-30698389 Length = 731 Score = 27.9 bits (59), Expect = 5.3 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 409 LPSYPSIHRAIYPTQPATSCARTVSLVISSQNDED 305 +PS P H + P+ PAT+ L SS +D+D Sbjct: 40 VPSPPPPHHLVVPSAPATTFMDQEELPESSSSDDD 74 >10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072, 3576349-3577543,3577626-3577762,3578052-3578242, 3578888-3579218 Length = 920 Score = 27.5 bits (58), Expect = 7.0 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = +1 Query: 223 GQSSGC*DAYKKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNL 357 GQSSGC + E +T + +H + + E+Q +H L Sbjct: 410 GQSSGCQQISNATVVQECMTPQMHPIVAQQHHKQMPNEQQQQHRL 454 >01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800, 14794906-14794986,14795078-14795147,14795267-14795337, 14795427-14795594,14796030-14796074,14796449-14796511, 14796594-14796869,14797858-14797971,14798099-14798225, 14798315-14798484,14798743-14798841,14799577-14799630, 14801487-14801522,14801741-14801844,14801952-14802186, 14802377-14802609,14802846-14803346,14803422-14803716, 14805796-14805881,14806952-14807064,14807303-14807385, 14808014-14808866,14809215-14809364,14809963-14811146 Length = 1854 Score = 27.5 bits (58), Expect = 7.0 Identities = 14/50 (28%), Positives = 21/50 (42%) Frame = +1 Query: 139 CSSYQIIREGHCEMRCTNTCCKKTYNDTGQSSGC*DAYKKQNIMEALTNY 288 C++ I G C + C K ND+ GC + NI + L +Y Sbjct: 1257 CNTLSYIYNGEYTTACASVCAKAPTNDSCDGVGC----CQNNIAKGLNSY 1302 >03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551, 3212650-3212840,3212967-3213102,3213216-3213716, 3213819-3213923,3214008-3214095,3214195-3214266, 3214692-3214762,3215726-3216008,3216388-3216463 Length = 675 Score = 27.1 bits (57), Expect = 9.2 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = +3 Query: 75 YH*LHK*RNKSRPKKSLKNT 134 Y L K RNKSR KKS+K T Sbjct: 76 YQSLSKERNKSREKKSMKGT 95 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,688,539 Number of Sequences: 37544 Number of extensions: 260966 Number of successful extensions: 751 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 733 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 751 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1154538620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -