Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0663
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562... 34 0.080
02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20... 31 0.57
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606... 31 0.75
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 29 1.7
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337... 29 3.0
06_01_0603 - 4350124-4350590,4350995-4353608 28 5.3
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 28 5.3
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 28 5.3
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 27 7.0
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 27 7.0
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321... 27 9.2
>04_03_0616 -
18052596-18053779,18053935-18054099,18056236-18056260,
18057259-18057312,18057354-18057619,18058633-18059371
Length = 810
Score = 33.9 bits (74), Expect = 0.080
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 199 CKKTYNDTG---QSSGC*DAYKKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAE 369
CKK Y S+GC ++ IM R+K+ LR + + E + +H+ LRA+
Sbjct: 229 CKKGYQGNPYLQDSNGCQGSFLHCQIMSLSARSREKQVKLRRMSLCVPEGRAQHSWLRAK 288
Query: 370 WDK 378
K
Sbjct: 289 GTK 291
>02_01_0033 +
202703-202705,203397-203458,203566-203665,203875-203916,
204264-204305,204437-204589,206559-207221
Length = 354
Score = 31.1 bits (67), Expect = 0.57
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 226 QSSGC*DAYKKQN-IMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDM 402
+ S C KKQ +M+ + R+KE +L M+L++ + L + W S+GEL++
Sbjct: 45 EKSLCSIRQKKQKMLMDQILELREKEMNLLKENMVLRD---QCKALSSPWSTSVGELKNK 101
Query: 403 KA 408
+A
Sbjct: 102 QA 103
>03_05_1011 +
29658144-29658310,29659531-29659676,29660526-29660602,
29660682-29660804,29661817-29661924,29661995-29662075,
29662157-29662309,29662469-29662540,29662745-29662863,
29662958-29663071,29663176-29663221,29664865-29664933,
29665662-29665808,29666410-29666706
Length = 572
Score = 30.7 bits (66), Expect = 0.75
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Frame = -1
Query: 327 YHLKMTKTGFLISIVCQGFHYIL--FLVSISASRALSGVVISFFTACVC---ATHFTVTF 163
YH +T G+ ++V G H ++ FL + + R+L+ ++ + A A FT+ +
Sbjct: 334 YHFDLTTGGYR-ALVFSGDHDLILPFLSTQAWIRSLNFSIVDEWRAWHVDGQAAGFTILY 392
Query: 162 SNNLIAATSPYSLMISSVL 106
+NNL AT SL +S+ L
Sbjct: 393 ANNLTFATVKVSLFLSTSL 411
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Frame = +3
Query: 30 YLYSPPNLSF*ER-----NLYH*LHK*RNKSRPKKSLKNTV-M*QLSNY*RRSL*NALHK 191
Y+ PPNLS +LY LH+ ++ + LK + + + NY S +H+
Sbjct: 663 YVTQPPNLSILTEYLPRGSLYRLLHRPNSQIDETRRLKMALDVAKGMNYLHASHPTIVHR 722
Query: 192 HML*KNL*RHRTELWMLRCLQETKYNGSLD 281
+ NL + W+++CL ET++ +LD
Sbjct: 723 DLKSPNLLVDKN--WVVKCLHETEHLDTLD 750
>12_01_0428 +
3374519-3375423,3376663-3376742,3377206-3377217,
3377337-3377379,3378304-3380332
Length = 1022
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 364 AEWDKSLGELRDMKAAVSDDEEMDTNSAYYVRLRTLVSKMEMIRWL-IGN 510
AE +LG+L+++ V ++M N+ +L + +SKM +RWL IGN
Sbjct: 789 AEEIGALGQLQELAIFVDTGKKM--NNGVVKKLASSLSKMYSLRWLDIGN 836
>06_01_0603 - 4350124-4350590,4350995-4353608
Length = 1026
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 261 LFLVSISASRALSGVVISFFTACVCATHFTVTFSNNLIAATSPYS 127
L+ + +S +R G+ + F C C V +NN +A PYS
Sbjct: 153 LYFLDLSGNRLSGGIPATLF--CNCTALQYVDLANNSLAGDIPYS 195
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +1
Query: 250 YKKQNIMEALTNYRDKETSLRHFEMILQEKQYEHN----LLRAEWDKSLGELRDMKAAVS 417
YK Q + E L ++ + +L + L+EKQ HN L+ + W++ + +L+ S
Sbjct: 49 YKNQKLSEQLEAHKFEYRALENKFAGLKEKQRTHNETLSLVNSSWEQLVADLKSRSFCKS 108
Query: 418 DDEEMDTNSAY 450
S +
Sbjct: 109 GSPNSSPGSGH 119
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 409 LPSYPSIHRAIYPTQPATSCARTVSLVISSQNDED 305
+PS P H + P+ PAT+ L SS +D+D
Sbjct: 40 VPSPPPPHHLVVPSAPATTFMDQEELPESSSSDDD 74
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 223 GQSSGC*DAYKKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNL 357
GQSSGC + E +T + +H + + E+Q +H L
Sbjct: 410 GQSSGCQQISNATVVQECMTPQMHPIVAQQHHKQMPNEQQQQHRL 454
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 139 CSSYQIIREGHCEMRCTNTCCKKTYNDTGQSSGC*DAYKKQNIMEALTNY 288
C++ I G C + C K ND+ GC + NI + L +Y
Sbjct: 1257 CNTLSYIYNGEYTTACASVCAKAPTNDSCDGVGC----CQNNIAKGLNSY 1302
>03_01_0418 -
3211687-3211933,3212016-3212164,3212443-3212551,
3212650-3212840,3212967-3213102,3213216-3213716,
3213819-3213923,3214008-3214095,3214195-3214266,
3214692-3214762,3215726-3216008,3216388-3216463
Length = 675
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 75 YH*LHK*RNKSRPKKSLKNT 134
Y L K RNKSR KKS+K T
Sbjct: 76 YQSLSKERNKSREKKSMKGT 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,688,539
Number of Sequences: 37544
Number of extensions: 260966
Number of successful extensions: 751
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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