Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0663
(525 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neur... 30 1.2
AL034393-9|CAA22314.1| 248|Caenorhabditis elegans Hypothetical ... 29 1.5
AF040653-2|ABC48247.1| 343|Caenorhabditis elegans Hypothetical ... 29 1.5
AC006627-10|AAK85465.1| 499|Caenorhabditis elegans Hypothetical... 29 2.0
Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70310-3|CAA94365.1| 506|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical pr... 27 8.2
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 8.2
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 8.2
AF077537-11|AAC26280.1| 230|Caenorhabditis elegans Hypothetical... 27 8.2
>U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neuro d
homolog protein1 protein.
Length = 192
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 427 PRHH*LLPSYPSIHRAIYPTQPATSCA 347
P HH L PS+P H + + P++SC+
Sbjct: 125 PSHHQLHPSHPPPHSSFSSSSPSSSCS 151
>AL034393-9|CAA22314.1| 248|Caenorhabditis elegans Hypothetical
protein Y18D10A.11 protein.
Length = 248
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 226 QSSGC*DAYKKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKS----LGEL 393
++ G DA K ++ E L N +D E S+ + + + + E+N+L+A W + + EL
Sbjct: 111 RTEGIVDANK--SLSEQLANAQDAEVSMTTLKETVAKLEEENNVLQATWAEERSGLVNEL 168
Query: 394 RDMKAAVSDDEEMDT 438
D K ++ + T
Sbjct: 169 IDTKEKLAKSAQAQT 183
>AF040653-2|ABC48247.1| 343|Caenorhabditis elegans Hypothetical
protein K05F6.11 protein.
Length = 343
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 277 LTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDDEEMDTNSAYYV 456
++++ K+ S+R F +++ KQ+ H++ ++DK+ +L +K V DD+ + N
Sbjct: 91 ISHWIKKDGSVRLF-VVVHSKQFRHSIAILDFDKTKWQLNHVK-TVRDDKFVRPNDVVAT 148
Query: 457 RLRT-LVSKMEMIRWLIGN 510
+ LVS + +IGN
Sbjct: 149 GENSFLVSNDGGAQTIIGN 167
>AC006627-10|AAK85465.1| 499|Caenorhabditis elegans Hypothetical
protein E01A2.8 protein.
Length = 499
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 277 LTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDDEEMDTNSAYYV 456
++++ K+ S+R F +++ KQ+ H++ ++DK+ +L +K V DD+ + N
Sbjct: 247 ISHWIKKDGSVRLF-VVVHSKQFRHSIAILDFDKTKWQLNHVK-TVRDDKFVRPNDVVAT 304
Query: 457 RLRT-LVSKMEMIRWLIGN 510
+ LVS + ++GN
Sbjct: 305 GENSFLVSNDGGAQTIVGN 323
>Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical
protein C44F1.5 protein.
Length = 1109
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -1
Query: 288 IVCQGFHYILFLVSISASRAL--SGVVISFFTACVCATHFTVTFSNNLIAATSPYSLMIS 115
+V G +++L + + S AL + + FF + + TFS + ++ +++ I
Sbjct: 361 LVVYGIYHMLVMPRLITSLALIVGALTVMFFILLMLYIDYFHTFSQFITRTSAGHAVSII 420
Query: 114 SVLTCSVICGVSDT 73
++ +CG+ +T
Sbjct: 421 LIIVILFVCGIVNT 434
>Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical
protein C44F1.5 protein.
Length = 1109
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -1
Query: 288 IVCQGFHYILFLVSISASRAL--SGVVISFFTACVCATHFTVTFSNNLIAATSPYSLMIS 115
+V G +++L + + S AL + + FF + + TFS + ++ +++ I
Sbjct: 361 LVVYGIYHMLVMPRLITSLALIVGALTVMFFILLMLYIDYFHTFSQFITRTSAGHAVSII 420
Query: 114 SVLTCSVICGVSDT 73
++ +CG+ +T
Sbjct: 421 LIIVILFVCGIVNT 434
>Z70310-3|CAA94365.1| 506|Caenorhabditis elegans Hypothetical
protein R11A8.3 protein.
Length = 506
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +2
Query: 65 AKPVSLTPQITEQVKTEEIIKEYGDVAAIKLLEKVTVKCVAQTHAVKKLITTPDRALDAE 244
+KP+ L P + K ++ + G VA LL+K+ + HA+ ++T P + E
Sbjct: 382 SKPMILMPLFADHAKNSKVAESKG-VAV--LLDKMRLSRRRVVHAIYTILTNPKYTQNCE 438
Query: 245 MLTR 256
+R
Sbjct: 439 KFSR 442
>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical protein
ZK593.5 protein.
Length = 1326
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1
Query: 250 YK-KQNIMEALTNYRDKETS--LRHFEMILQEKQYEHNLLRAEWDKSLGEL-RDMKAAVS 417
YK + ++ E+ N DK ++H E + + +H + E+D+S+ L R+MK S
Sbjct: 1055 YKLRLDMAESRLNSTDKAEGDKVKHLEEKINQMVADHRRKQIEYDESMDALQREMKEVES 1114
Query: 418 DDEEM 432
D+ E+
Sbjct: 1115 DNLEL 1119
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 28.3 bits (60), Expect = 3.6
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Frame = +1
Query: 172 CEMRCTNTC---CKKTYNDTGQSSGC*DAYKKQNIMEALTNYRDKETSLRHFEMILQEKQ 342
C M C NTC C K + T SS + +++ A+ + Q+KQ
Sbjct: 55 CRMNCQNTCVNACNKQFAPT-SSSSIVQIKNQPSVIRAVAGKSCLSGCNSQCSNVCQQKQ 113
Query: 343 YEHNLLRAEWDKSLGEL-RDMKAAVSDDEEMDTNSAYYVRLRTL 471
Y + + ++S + + +A S + T + V ++ L
Sbjct: 114 YSSSQCASSCNRSCSRVCQSNPSASSSQSQTTTQTPLKVSIKVL 157
>Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical
protein C01G12.7 protein.
Length = 584
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/66 (24%), Positives = 36/66 (54%)
Frame = -1
Query: 312 TKTGFLISIVCQGFHYILFLVSISASRALSGVVISFFTACVCATHFTVTFSNNLIAATSP 133
T + ++S+V GF+ +L L++ +++ L+GV+ + A F + + L++ T+
Sbjct: 106 TYSDTVLSVVL-GFYALLLLIAFASNILLAGVIKKYRWGMKMALLFHLCVTGALLSITNT 164
Query: 132 YSLMIS 115
L+ S
Sbjct: 165 LHLLAS 170
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 265 IMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDD 423
+++ L++Y T + F I+ + Q + E+DK + LRD+ DD
Sbjct: 388 LLKVLSSYNLMRTPIAEFNEIMSQCQALFSKWDDEYDKFIALLRDINKKKRDD 440
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 265 IMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDD 423
+++ L++Y T + F I+ + Q + E+DK + LRD+ DD
Sbjct: 388 LLKVLSSYNLMRTPIAEFNEIMSQCQALFSKWDDEYDKFIALLRDINKKKRDD 440
>AF077537-11|AAC26280.1| 230|Caenorhabditis elegans Hypothetical
protein F16G10.13 protein.
Length = 230
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -1
Query: 432 HFLVITDCCLHIPQFTERFIP--LSPQQ 355
+ LV+T+CC+ + + +IP LSP+Q
Sbjct: 12 YLLVVTECCMRMVPPDDAYIPSTLSPEQ 39
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,166,867
Number of Sequences: 27780
Number of extensions: 245659
Number of successful extensions: 794
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -