Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0663
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.5  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 525 YDKQPISYKPPYHLHLRDQGSKAYII 448
           YD  P  +  PY+++ R+Q S++++I
Sbjct: 328 YDNTPRDF--PYYMYSREQYSQSHLI 351


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 262 NIMEALTNYRDKETSLRHFEMILQ 333
           N++E L NY DKE ++  F  +L+
Sbjct: 63  NLVENLDNYNDKE-AVNEFMQLLK 85



 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 256 KQNIMEALTNYRDKETSLRHFEMIL 330
           K N+ E   NY  ++  L HF  +L
Sbjct: 211 KHNVPEQRLNYFTEDVGLNHFYFML 235


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 262 NIMEALTNYRDKETSLRHFEMILQ 333
           N++E L NY DKE ++  F  +L+
Sbjct: 63  NLVENLDNYNDKE-AVNEFMQLLK 85



 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 256 KQNIMEALTNYRDKETSLRHFEMIL 330
           K N+ E   NY  ++  L HF  +L
Sbjct: 211 KHNVPEQRLNYFTEDVGLNHFYFML 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,609
Number of Sequences: 438
Number of extensions: 3063
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)