Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0662
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    28   1.8  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    27   2.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   4.1  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   5.4  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    26   5.4  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.1  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    26   7.1  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    26   7.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.1  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   7.1  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    25   9.4  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.4  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 269 RTDDEYLLRYLRARNFVVPRAHKLLVRYCTFREQ 370
           R DD  LLR+LRAR F + ++ ++ ++   +R++
Sbjct: 47  RLDDATLLRFLRARKFNLQQSLEMFIKCEKWRKE 80


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 278 DEYLLRYLRARNFVVPRAHKLLVRYCTFREQ 370
           D  LLR+L+AR FVV  +  +L     +R+Q
Sbjct: 52  DLTLLRFLKARKFVVTDSSDMLANAIVWRQQ 82


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -1

Query: 567 GLSYPNLNHRHAGPNQVLHRNSFGSH--IPNRNIGSLPTSGLSNMEPSYASCTFTKPHRS 394
           G SYPN+       N  +     GS   +   + GS   S +SN+ PS+++ T ++    
Sbjct: 141 GSSYPNIRKNSVHVNAPMPSFPEGSTAVLLKHHSGSKSASAISNIAPSHSNSTSSRRPYI 200

Query: 393 TPSY 382
            P++
Sbjct: 201 HPAF 204


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 499 KRVPVEDLVRAGMAMVEIGIRQPKLQVLGGTVIVDLE 609
           KR P+  L R G+A++ + I   K    GG  I+D E
Sbjct: 42  KRFPLSVLQRKGLALINLRIGVVKTG-FGGKTIIDFE 77


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 428 YEGSMFDRPDVGRLPIFRF 484
           Y+G +F  P+ G+LP+F F
Sbjct: 103 YKGELFHPPNNGKLPVFIF 121


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +3

Query: 252 GSVAL*GPTMSTCCGTSERGTLLYPERINC*SVIALSANNKGPCMKA*TYG 404
           GS+    P       +S   TLL  E INC +V A +   K  C+    YG
Sbjct: 359 GSLIACAPMWDFVYSSSRHNTLL-DEDINCNTVYATAGIGKSGCLVTMRYG 408


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
 Frame = +2

Query: 77  LELPGHHNVRVLSRDRLRGRGEHGRKPRTAGDGSGALQ--REPSYQGDSDYGATTD---- 238
           L+ P H + RV  +D L G  +      + G G+G L+  ++ S      +  T +    
Sbjct: 275 LDAPYHDSPRVRRQDYLLGLIDTRSMSESKGSGNGKLRKVKKISKNAKRIFSKTRNAIST 334

Query: 239 ---DIQSRKCRPLRTDDEYLLRYLRARNFVVPRAHKLLVRYCTFREQQRSLYEGVDLWGL 409
              D+  +  + L  + E++L  +R++   +  A K+   + +   +    ++  DL GL
Sbjct: 335 AFTDMLGKHAKDLTPEQEFILETIRSKKKCLALARKI---WYSLVPEGEDCFQKEDLIGL 391

Query: 410 V 412
           +
Sbjct: 392 I 392


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 147 EENPELLEMARELCNENPATRATAITELRQ 236
           EEN E+LE ++E  +EN   + T+ T + +
Sbjct: 210 EENDEILEDSKESKDENEENKETSTTNVAE 239


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 230 TTDDIQSRKCRPLRTDDEYLLRYLRARNFVVPRAHKLLVRYCTFREQQRSLY 385
           +T+D +SR+   L +DD     Y+   N V  +  K+  +  +  EQ R +Y
Sbjct: 50  STNDFESREDLSLTSDDNNDPEYVMCYNTVYHQKTKINDKLLSETEQLRKIY 101


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 599 TITVPPRT*SLGCRIPISTIAMPALTKSSTG 507
           TI+VP +  ++G  IPI  + +P L + + G
Sbjct: 187 TISVPTKAYAIGSYIPIHFVLVPLLKRLTIG 217


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 283 VPAAVPPSEELCCTQSA*TASPLLHFPRTTKVL 381
           +P   P  ++LC    +   SP LH+P+  KV+
Sbjct: 88  LPPKTPEDQKLCNDFFSTRISPNLHWPKLAKVV 120


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 672 NGAREPDSSERSTLDQLLMDIEHVFLLIQEIIPRRPGTRY 791
           NG +EP++  R  LD++ +++ +   L++ ++   P   Y
Sbjct: 10  NGVKEPNTPLREALDEIFLNVGY---LLRSLLANVPNALY 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,222
Number of Sequences: 5004
Number of extensions: 66006
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)