Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0662
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0590 - 5295583-5295747,5296146-5296205,5296603-5296665 31 0.80
02_01_0755 + 5604554-5604608,5604706-5604734,5606558-5606641,560... 31 1.1
09_02_0102 - 4295329-4295366,4295622-4295702,4295946-4296252,429... 31 1.4
01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165 30 2.4
12_02_0634 + 21416205-21416954 29 3.2
08_02_1133 + 24554037-24554043,24554524-24554797,24554890-245549... 29 3.2
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966... 29 3.2
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 29 4.3
03_06_0277 + 32814621-32814996,32815419-32815558,32816074-32816160 29 4.3
03_05_0147 - 21268081-21268596 29 4.3
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791... 29 5.6
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 29 5.6
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 28 7.4
03_06_0195 + 32256771-32258792 28 7.4
03_05_0424 + 24107009-24107138,24107381-24107784 28 7.4
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 28 7.4
12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193 28 9.8
06_01_0073 + 599296-599423,599803-599859,600418-600697 28 9.8
>05_01_0590 - 5295583-5295747,5296146-5296205,5296603-5296665
Length = 95
Score = 31.5 bits (68), Expect = 0.80
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 640 TPTVAYQIVSLMGLANPTR-VKGAHLINYSWILNTFFYLFKKSYRVGLG 783
+PT +Y S MG NPT + L+ Y W T + S RVG G
Sbjct: 3 SPTTSYSTTSAMGRFNPTECICTIALVRYVWATQTGAQKEQLSTRVGCG 51
>02_01_0755 +
5604554-5604608,5604706-5604734,5606558-5606641,
5606728-5606781,5606958-5607035,5607753-5607806,
5608060-5608119,5608202-5608297,5608403-5608504,
5608614-5608673,5608819-5609109
Length = 320
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +2
Query: 281 EYLLRYLRARNFVVPRAHKLLVRYCTFREQ 370
E LLR+L+AR + V +AHK+LV +R Q
Sbjct: 37 ETLLRFLKAREWNVSKAHKMLVDSLNWRIQ 66
>09_02_0102 -
4295329-4295366,4295622-4295702,4295946-4296252,
4296616-4296696,4296818-4296919,4297358-4297396,
4297453-4297548,4297624-4297683,4297942-4297995,
4298230-4298307,4298577-4298630,4298705-4298788,
4300457-4300485,4300666-4300720
Length = 385
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 287 LLRYLRARNFVVPRAHKLLVRYCTFREQ 370
L+R+L+AR + VP+AHK+L+ +R Q
Sbjct: 39 LVRFLKAREWNVPKAHKMLMDCLNWRIQ 66
>01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165
Length = 476
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Frame = -2
Query: 557 IPISTIAMPALTKSSTGTRLGPTYQIEI*GVFRHQACRTWSL----RMRLAPSPSPIGLR 390
I +S+ A+P + TG + T E+ H + RTWS + +P P P L
Sbjct: 381 ICVSSKALPTIFCGDTGGYIFHTPPTELFFTQYHLSSRTWSPLIDGSIGNSPPPRPYSLI 440
Query: 389 LHTRTFVVRGKCNNGLAVY 333
H T R N GL Y
Sbjct: 441 HHILTCCYRKYWNKGLIFY 459
>12_02_0634 + 21416205-21416954
Length = 249
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 116 RDRLRGRGEHGRKPRTAGDGSG 181
R LRGRG GR+ R+ GD +G
Sbjct: 113 RPALRGRGRGGRRRRSGGDATG 134
>08_02_1133 +
24554037-24554043,24554524-24554797,24554890-24554989,
24555089-24555355,24555455-24555532,24555616-24555717,
24555798-24555847,24555916-24556051,24556374-24556490,
24556659-24556818,24557450-24557811,24558075-24558152,
24558274-24558294
Length = 583
Score = 29.5 bits (63), Expect = 3.2
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Frame = +2
Query: 236 DDIQSRKCRPLRTDDEYL-LRYLRARNFVVPRAHKLLVRYCTFREQ--QRSLYEGVDLWG 406
D + + P + DD ++ LR+L+AR F + RA ++ +RE+ ++ + D
Sbjct: 74 DRLAAHGLLPDKHDDYHMMLRFLKARKFDIDRAMQMWADMLKWREEFGADTILQDFDFHE 133
Query: 407 LVKVQDAYEGSMFDRPDVGRLPIF--RFGMWDPNE 505
L +V Y GR P++ R G DPN+
Sbjct: 134 LDEVLRYYPQGYHGVDREGR-PVYIERLGKVDPNK 167
>08_01_0963 -
9661699-9661760,9662095-9662818,9662860-9663265,
9663488-9665037
Length = 913
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 388 RRRPMGLGEGARRIRRLHVRQA*C 459
R P+ +G+G R+R LH+R A C
Sbjct: 767 RALPLEIGQGTTRLRELHIRGANC 790
>11_02_0063 +
7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 162 LLEMARELCNENPATRATAITELRQM 239
+LE+ +C +NP T+ TA L+QM
Sbjct: 538 VLEVLENICEDNPTTKTTATGLLKQM 563
>03_06_0277 + 32814621-32814996,32815419-32815558,32816074-32816160
Length = 200
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 653 ATVGVKVATCRS-VMPSRSTITVPPRT*SLGCRIPISTIAMPALTKSSTGTRLG 495
A++GV V T R+ ++P ++ PP + +P+S+ A P + + T G
Sbjct: 96 ASLGVAVDTARAALLPGACSVQAPPASQCNAAGVPVSSPANPTTSGGTPATPAG 149
>03_05_0147 - 21268081-21268596
Length = 171
Score = 29.1 bits (62), Expect = 4.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 509 RWRTWLGPAWRWLR 550
+WR W G WRW+R
Sbjct: 33 KWRRWGGVGWRWIR 46
>11_02_0062 -
7909343-7909413,7909509-7910974,7911064-7912088,
7912300-7912809,7913418-7913441,7913617-7913673
Length = 1050
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 162 LLEMARELCNENPATRATAITELRQM 239
+LE+ +C +NP T+ TA L+QM
Sbjct: 714 VLEVLENICEDNPTTKITATGLLKQM 739
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 131 GRGEHGRKPRTAGDGSGALQREPS 202
G GE ++PR GDG G +Q S
Sbjct: 64 GGGEDAKRPRVEGDGEGVVQSNES 87
>04_04_1624 - 34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 555 PNLNHRHAGPNQVLHRNSFGSHIPNRNIGSLPTSGLSNMEPSYASCTFT 409
PN HA L+ S G H + + G T ++ ++PSY SC FT
Sbjct: 1117 PNNVQAHAAFAMNLYFQSNGQHEFDCDFGQ--TGVITTVDPSYKSCKFT 1163
>03_06_0195 + 32256771-32258792
Length = 673
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 167 GDGSGALQREPSYQGDSDYGATTD 238
GD SGA + EPS G+SD+ D
Sbjct: 509 GDASGADEEEPSDAGESDHDTAPD 532
>03_05_0424 + 24107009-24107138,24107381-24107784
Length = 177
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -2
Query: 443 TWSLRMRLAPSPSPIGLRLHTRTFVVRGKCNNGLAVYALWVQQSSSLGGTAAGTHRRSSE 264
TW LR RL P + RL +++ G+C GL Q+ + GT E
Sbjct: 17 TWYLRYRLVPGTWYLWYRLGIDRYLMSGRC--GLPASISEAQKRQAAAGTTVMHAEAEGE 74
Query: 263 GDTSA 249
+ S+
Sbjct: 75 DEESS 79
>02_01_0500 -
3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 98 NVRVLSRDRLRGRGEHGRKPRTAGDGSGALQREPSYQGDSDYGATTDDIQSRKCR 262
N R+ SRDR G+ + R++ S RE SY+ D DY + D K R
Sbjct: 138 NKRIGSRDRAEFHGDFEDRYRSSHQ-SREDSREDSYERDRDYDRYSYDSDYEKSR 191
>12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193
Length = 353
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 455 DVGRLPIFRFGMWDPNEFRWRTWLGP 532
DV RL + R+GM D E R +W P
Sbjct: 216 DVARLNVQRYGMQDKVEIRHGSWFEP 241
>06_01_0073 + 599296-599423,599803-599859,600418-600697
Length = 154
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 302 GGTAAGTHRRSSEGDTSATEYHLS*LRNRCRPGSWVLVAEL 180
GG A RRS+ GD+S HL L + +PG+++ EL
Sbjct: 11 GGEAGMRWRRSAGGDSSLPSSHLIVLCSSRQPGNFIERDEL 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,329,725
Number of Sequences: 37544
Number of extensions: 489903
Number of successful extensions: 1662
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1659
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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