Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0662
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   10.0 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   10.0 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   10.0 

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 690 DSSERSTL-DQLLMDIEHVFLLIQEIIP 770
           DS E+ +L   +L+ +   FLL+ EIIP
Sbjct: 276 DSGEKVSLCSSILLSLTVFFLLLAEIIP 303


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 703 GAHLINYSWILNTFFYLFKKSY 768
           G+  I   W+ +TFF   K+SY
Sbjct: 86  GSEFIKNIWVPDTFFVNEKQSY 107


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 703 GAHLINYSWILNTFFYLFKKSY 768
           G+  I   W+ +TFF   K+SY
Sbjct: 86  GSEFIKNIWVPDTFFVNEKQSY 107


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 703 GAHLINYSWILNTFFYLFKKSY 768
           G+  I   W+ +TFF   K+SY
Sbjct: 25  GSEFIKNIWVPDTFFVNEKQSY 46


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 536 WRWLRLGY 559
           WRW+RL Y
Sbjct: 59  WRWIRLTY 66


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 536 WRWLRLGY 559
           WRW+RL Y
Sbjct: 97  WRWIRLTY 104


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 368 VRGKCNNGLAVYALWV 321
           +   C+  LAVY +W+
Sbjct: 578 INHSCDPNLAVYGVWI 593


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,881
Number of Sequences: 438
Number of extensions: 4698
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)