Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0662
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    33   0.29 
At5g06680.1 68418.m00754 tubulin family protein similar to SP|Q9...    32   0.50 
At4g08690.1 68417.m01432 SEC14 cytosolic factor family protein /...    31   0.88 
At1g55840.1 68414.m06404 SEC14 cytosolic factor (SEC14) / phosph...    30   2.0  
At2g15080.2 68415.m01719 disease resistance family protein conta...    29   3.6  
At2g15080.1 68415.m01718 disease resistance family protein conta...    29   3.6  
At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /...    29   4.7  
At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative (CH...    28   6.2  
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro...    28   8.2  

>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +2

Query: 113 SRDRLRGRGEHGRKPRTAGDGSGALQREPSYQGD 214
           SR R  GRGE  R     G   G   RE SY+GD
Sbjct: 239 SRSRSTGRGEFSRSRSPRGRSHGRSYREDSYEGD 272


>At5g06680.1 68418.m00754 tubulin family protein similar to
           SP|Q96CW5 Gamma-tubulin complex component 3 {Homo
           sapiens}
          Length = 838

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = -2

Query: 302 GGTAAGT-HRRSSEGDTSATEYHLS*LRNRCRP-----GSWVLVAELPSHLQQFGVFFRV 141
           GG  AG  H  +  GD    ++ +S LR  C P      SWVL  EL      FG FF V
Sbjct: 336 GGAMAGAIHLHAQHGDPLVHDFMMSLLRCVCSPLFEMVRSWVLEGELE---DTFGEFFVV 392

Query: 140 HLGLEGDLL 114
              ++ DLL
Sbjct: 393 GQPVKVDLL 401


>At4g08690.1 68417.m01432 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650: CRAL/TRIO domain; similar to
           polyphosphoinositide binding protein Ssh2p (GI:2739046)
           [Glycine max]; similar to SEC14-like protein (GB:U82515)
           [D. discoideum]
          Length = 301

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 278 DEYLLRYLRARNFVVPRAHKLLVRYCTFREQQR 376
           D+ +LRYLRARN+ V +A K+L     +R Q +
Sbjct: 43  DDAVLRYLRARNWHVKKATKMLKETLKWRVQYK 75


>At1g55840.1 68414.m06404 SEC14 cytosolic factor (SEC14) /
           phosphoglyceride transfer protein similar to
           polyphosphoinositide binding protein SEC14 homolog Ssh1p
           (GB:AAB94598) [Glycine max]; identified in Eur J Biochem
           1998 Dec 1;258(2):402-10 as AtSEC14, characterized by
           functional complementation in S. cerevisiae.
          Length = 325

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 281 EYLLRYLRARNFVVPRAHKLLVRYCTFREQ 370
           E LLR+L+AR+  V +AHK+L+    +R Q
Sbjct: 37  ENLLRFLKARDGNVQKAHKMLLECLEWRTQ 66


>At2g15080.2 68415.m01719 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 983

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 604 LEGITLRHVATLTPTVAYQIVSLMGLANPTRVKGAHL--INYSWILNTFFYLFKKSYRVG 777
           +E + L H+ T T    Y+I+S   L +   + G+H+   N S + N+   L  + Y  G
Sbjct: 452 IEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHVSTTNKSSLSNSSLVLISQLYLSG 511

Query: 778 LG 783
            G
Sbjct: 512 CG 513


>At2g15080.1 68415.m01718 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 983

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 604 LEGITLRHVATLTPTVAYQIVSLMGLANPTRVKGAHL--INYSWILNTFFYLFKKSYRVG 777
           +E + L H+ T T    Y+I+S   L +   + G+H+   N S + N+   L  + Y  G
Sbjct: 452 IEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHVSTTNKSSLSNSSLVLISQLYLSG 511

Query: 778 LG 783
            G
Sbjct: 512 CG 513


>At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to cytosolic factor
           (Phosphatidylinositol/phosphatidylcholine transfer
           protein) (PI/PCTP) (SP:P24280) [Saccharomyces
           cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700
           come from this gene
          Length = 540

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 278 DEYLLRYLRARNFVVPRAHKLLVRYCTFREQQR 376
           D  LL++LRAR+F V  A ++L +   +R+Q +
Sbjct: 220 DVILLKFLRARDFKVNEAFEMLKKTLKWRKQNK 252


>At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative
           (CHX13) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 831

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 301 PSEELCCTQSA*TASPLLHFPRTTKVL 381
           PS+ + CT SA + S +  FP TT VL
Sbjct: 175 PSDVISCTSSAISLSSMTSFPVTTTVL 201


>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 384

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -1

Query: 474 IGSLPTSGLS--NMEP-SYASCTFTKPHRSTPS 385
           + S+P  GLS  N E  S+A C  TKP RST S
Sbjct: 238 LSSIPVKGLSFKNSEILSWAHCESTKPGRSTDS 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,644,645
Number of Sequences: 28952
Number of extensions: 366680
Number of successful extensions: 1088
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)