Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0661
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    86   3e-18
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    29   0.49 
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    28   0.86 
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    28   0.86 
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    28   0.86 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   1.5  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   2.0  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    26   3.5  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   3.5  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   6.1  

>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 85.8 bits (203), Expect = 3e-18
 Identities = 38/79 (48%), Positives = 56/79 (70%)
 Frame = +1

Query: 247 ISSYLPELTNPIVACFSESESRVRYQAAEALFNVLKIVRGASLSQFPVIFDALAKLAADP 426
           I SY+  +  P++ CF++S+S++RY A E+++N+ K+ +G     F +IFD L KL AD 
Sbjct: 80  IDSYMESILLPVLYCFNDSDSKIRYYACESMYNIGKVAKGEVFRYFNLIFDVLCKLFADT 139

Query: 427 EQQVKHAAELLDRLLKDIV 483
           E  VK+ AELLDRL+KDIV
Sbjct: 140 EITVKNGAELLDRLIKDIV 158



 Score = 58.4 bits (135), Expect = 5e-10
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
 Frame = +2

Query: 32  VRGLCDKLYEKRKVAGVEIEKMVKDFNDAKNTSQIKKLIKVLGQDLMSS--TNPNMKNGA 205
           VRGL  KLY+KRK    E+E++VK + +   T +I+ +I  L  D + S    PN   G 
Sbjct: 6   VRGLTHKLYDKRKATAYELERVVKGYLENDETEKIRAVISQLANDFVYSPARGPNATFGG 65

Query: 206 LMGLSTVAVGLG 241
           L+GL+ VA+ LG
Sbjct: 66  LIGLAAVAIALG 77


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -2

Query: 258 VTTDALPSPTATVDRPISAPFFILGLVEDIKSWPKTLINFFIWLVFFASLKSFTIFSIST 79
           + +  L +PT+     + AP   +G     +  P+TL+N +   +   S + F +F    
Sbjct: 572 IKSKELETPTSATTSKLMAPMDNIGKFSGFERPPETLLNKWRQQLESESAEKFKVFRNQL 631

Query: 78  PAT 70
           PAT
Sbjct: 632 PAT 634


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 202 STYGSVYCSSGAWQGISSYLPELTNPIVACFSESESRVRY 321
           S +  +Y     W+ + S+   L+  IV C+ + E+R R+
Sbjct: 285 SFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRF 324


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 267 FW*VTTDALPSPTATVDRPISAPFFILGLVEDIKSWPKTLINFFIW 130
           F+ V    L S  AT+   +S    + G++  I  W +TL +F +W
Sbjct: 104 FFLVAVGVLLSGDATILLTLSCSLIVEGVLIIINVWRETLDSFLVW 149


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 268 LTNPIVACFSESESRVRYQAAEALFNVLKIVRGASLSQFPVIFDALAKLAADPEQQVKHA 447
           L  P+ +  S+S  R RY  A     + K+V G SL +  +I      L  D EQ+V+ A
Sbjct: 246 LLQPLRSFVSDSSWRTRYMVAANFVKLAKVV-GPSLIKDELI-KPFVLLMKDTEQEVRRA 303


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 41   LCDKLYEKRKVAGVEIEKMVKDFNDAKNTSQIKKLIKVLGQDLMSSTNPNMKNGALMGLS 220
            L D + + R  A   +  +++   + K  + I +L  VL     S  +   + GA  GLS
Sbjct: 1650 LIDPVPDTRATAAKALGSLIEKLGEKKFPTLIPELFNVL----RSECSEVDRQGAAQGLS 1705

Query: 221  TVAVGLGKA 247
             +  GLG A
Sbjct: 1706 EILAGLGLA 1714


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
 Frame = +1

Query: 271 TNPIVACFSESESRVRYQAAEALFNVLKIVRGASLSQFPVIFDALAKLAAD---PEQQVK 441
           TN + A           Q+  AL+  L +V+G      PV+F  L KL  D   PE+  +
Sbjct: 446 TNLLAAAIDTRMFHENTQSDAALYKRLTLVKGNKREFAPVMFRRLKKLGIDKTNPEELTE 505

Query: 442 HAAELLDRL 468
                  RL
Sbjct: 506 EEQRKFARL 514


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 23/53 (43%), Positives = 28/53 (52%)
 Frame = +1

Query: 298 ESESRVRYQAAEALFNVLKIVRGASLSQFPVIFDALAKLAADPEQQVKHAAEL 456
           E E R+R +  EA  N  + V   S S+F     AL KLA DPE   K A+EL
Sbjct: 186 EFEERLRRKDLEAATN--EFVEDYS-SKFSSEELALRKLADDPESWRKLASEL 235


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 147 INFFIWLVFFASLKSFTI 94
           IN+F+W  FF S  S+ I
Sbjct: 259 INYFLWFFFFFSFPSYII 276


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 232 GAWQGISSYLPELTNPIVACFSESESRVRYQA 327
           G W G++ YLP   +  V C+ ES+  ++ Q+
Sbjct: 138 GYWMGVAIYLPTTVSWWV-CYEESKKYLQKQS 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,870
Number of Sequences: 5004
Number of extensions: 34633
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)