Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0661
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0211 - 6436275-6436361,6436969-6437235,6438475-6438543,643... 87 9e-18
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536... 30 1.1
09_02_0481 - 9772783-9773985 29 1.5
04_03_1041 - 21938347-21938529,21938618-21938773,21939291-219394... 29 1.5
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 29 1.5
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553... 29 2.6
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 28 4.6
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 27 6.0
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87... 27 6.0
>03_02_0211 -
6436275-6436361,6436969-6437235,6438475-6438543,
6439108-6439236,6439319-6439480,6439558-6439678,
6439813-6439928,6440697-6440762,6441010-6441091,
6441236-6441327,6441430-6441537,6441919-6442013,
6442092-6442234,6442336-6442364,6442452-6442571,
6442645-6442734,6443116-6443181,6443267-6443380,
6443482-6443574
Length = 682
Score = 86.6 bits (205), Expect = 9e-18
Identities = 43/99 (43%), Positives = 61/99 (61%)
Frame = +1
Query: 190 YEKRSTYGSVYCSSGAWQGISSYLPELTNPIVACFSESESRVRYQAAEALFNVLKIVRGA 369
+ K G + G + +L ++ P++ F + +SRVRY A EAL+N+ K+VRG
Sbjct: 67 HRKGGLIGLAAVTVGLTSEAAQHLEQIVPPVLTSFLDQDSRVRYYACEALYNIAKVVRGD 126
Query: 370 SLSQFPVIFDALAKLAADPEQQVKHAAELLDRLLKDIVT 486
+ F IFDAL KL+AD + V+ AA LLDRL+KDIVT
Sbjct: 127 FIIYFNKIFDALCKLSADSDANVQSAAHLLDRLVKDIVT 165
Score = 58.4 bits (135), Expect = 3e-09
Identities = 31/71 (43%), Positives = 41/71 (57%)
Frame = +2
Query: 26 ACVRGLCDKLYEKRKVAGVEIEKMVKDFNDAKNTSQIKKLIKVLGQDLMSSTNPNMKNGA 205
A +R L DKLYEKRK A +EIE +VK + +I +I +L D S N + G
Sbjct: 12 AVLRNLSDKLYEKRKNAALEIEGIVKQLATSGEHDKISAVIALLTNDFTMSPQANHRKGG 71
Query: 206 LMGLSTVAVGL 238
L+GL+ V VGL
Sbjct: 72 LIGLAAVTVGL 82
>07_03_1778 +
29451902-29452166,29452665-29452849,29453504-29453693,
29453990-29454168,29454263-29454314,29454426-29454553,
29454920-29455099,29455209-29455276,29455364-29455506,
29455682-29455743,29455874-29455987,29456180-29456320,
29456680-29456832,29456973-29457026,29457102-29457212,
29457339-29457512,29457600-29457680,29457788-29457886,
29457905-29458057
Length = 843
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 211 HKCSVFHIRIS*RHQVLAQDFDQFFYL-ASIFCIIKIF 101
H+ +V HIRI RH +L + D F YL A +F ++ F
Sbjct: 779 HQTNVPHIRIEFRHTLLCLESDLFPYLSARLFLLVIAF 816
>09_02_0481 - 9772783-9773985
Length = 400
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 385 PVIFDALAKLAADPEQQVKHAAELLDR 465
PV++ AL LAA PE Q+K A+ L+R
Sbjct: 196 PVLYIALGTLAAIPEVQLKEVADGLER 222
>04_03_1041 -
21938347-21938529,21938618-21938773,21939291-21939408,
21939536-21940203,21941773-21941802
Length = 384
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 283 LLDLLILVSNY*CLAKPHCYSRQTHKCSVFHI 188
LL++ L SNY CL K H + H+C + HI
Sbjct: 165 LLEMHKLGSNYGCLTKLHLTNVSLHECFMEHI 196
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 247 ISSYLPELTNPIVACFSESESRVRYQAAEALFNVLKIVRGASLSQFPVIFDALAKLAADP 426
+++ LP+ T ++ C +E R Y+A A V +I G S + + D L K+ P
Sbjct: 790 VNAQLPKKTEHVLFCSLTTEQRATYRAFLASSEVEQIFDGNRNSLYGI--DVLRKICNHP 847
Query: 427 E-QQVKHAAE 453
+ + +HAA+
Sbjct: 848 DLLEREHAAQ 857
>05_02_0004 -
5528713-5528718,5529039-5529390,5529802-5530339,
5530354-5531731,5531895-5532015,5534226-5534545
Length = 904
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 223 CSSGAWQGISSYLPELTNPIVACFSESESRVRYQAAEALFNVL--KIVRGAS 372
CSS + + + I CF E ES R + FN+L K+++ AS
Sbjct: 748 CSSHSVSAFLAQYERIAETIYECFKEQESLTRNTVPDTWFNILSQKMIKLAS 799
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 27.9 bits (59), Expect = 4.6
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 44 CDKLYEKRKVAGVEIEKMVKDFNDAKNTSQIKK--LIKVLGQDLMSSTNPNMKNGALMGL 217
C+K Y +R+ A + +VK F S +KK + +L Q L + + GAL+G
Sbjct: 1309 CEK-YGERRGAAFGLAGVVKGFG----ISSLKKYGIAAILQQGLEDRASAKSREGALLGF 1363
Query: 218 STVAVGLGK 244
+ LGK
Sbjct: 1364 ECLCEKLGK 1372
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 47 DKLYEKRKVAGVEIEKMVKDFNDAKNTSQIKKLIKVL 157
+KLY KR V E++ DF ++T ++K +++L
Sbjct: 202 NKLYSKRLVGDKRYEEVKCDFRATQSTPKLKAELRIL 238
>05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-870214,
870606-870795,870888-871483
Length = 960
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 2 RDYAPLSIACVRGLCDKLYEKRKVAGVEIEKMVKD 106
R+Y P S+ CV L + + + G EI KM+ D
Sbjct: 913 RNYEPFSLDCVEALPLDHHSEVEAIGAEIVKMLHD 947
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,759,278
Number of Sequences: 37544
Number of extensions: 213698
Number of successful extensions: 518
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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