Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0661
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49033| Best HMM Match : HEAT (HMM E-Value=3.4)                      85   2e-17
SB_26421| Best HMM Match : HEAT (HMM E-Value=1.4e-07)                  58   3e-09
SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)                    29   1.5  
SB_21804| Best HMM Match : Auxin_resp (HMM E-Value=5.6)                29   2.0  
SB_5852| Best HMM Match : 3_5_exonuc (HMM E-Value=3.4e-07)             27   6.2  

>SB_49033| Best HMM Match : HEAT (HMM E-Value=3.4)
          Length = 84

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 41/81 (50%), Positives = 54/81 (66%)
 Frame = +2

Query: 2   RDYAPLSIACVRGLCDKLYEKRKVAGVEIEKMVKDFNDAKNTSQIKKLIKVLGQDLMSST 181
           +DY PL+   VRGL DKLYEKRK A +E+E+MVK+F       QIKKL +VL +D   S 
Sbjct: 4   KDYLPLTQNVVRGLNDKLYEKRKTAALEVERMVKEFVANNEVKQIKKLTQVLAEDFAVSH 63

Query: 182 NPNMKNGALMGLSTVAVGLGK 244
           N + + G L+GL+  A+ LGK
Sbjct: 64  NSHARKGGLIGLAAAAIALGK 84


>SB_26421| Best HMM Match : HEAT (HMM E-Value=1.4e-07)
          Length = 56

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 24/52 (46%), Positives = 37/52 (71%)
 Frame = +1

Query: 256 YLPELTNPIVACFSESESRVRYQAAEALFNVLKIVRGASLSQFPVIFDALAK 411
           YL +L  P+++CF + +SRVRY A EAL+N+ K+ RG+ L  F  +F+ L+K
Sbjct: 5   YLKDLIPPVLSCFYDQDSRVRYYACEALYNIAKVARGSVLPFFNEVFEGLSK 56


>SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)
          Length = 999

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 23  IACVRGLCDKLYEKRKVAGVE-IEKMVKDFNDAKNTSQIKKLIKVLGQDLMS 175
           + CV  + D     R +A ++ +E+ +KD   A NT+ +    K LG DLM+
Sbjct: 145 LLCVADMADVC---RLLASLKLVERRLKDLEGASNTADLLNSFKNLGNDLMN 193


>SB_21804| Best HMM Match : Auxin_resp (HMM E-Value=5.6)
          Length = 106

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 190 YEKRSTYGSVYCSSGAWQGISSYLPELTNPIVACFSESESRVRYQAAEALFNVLKIVRGA 369
           + KR  +  + CS   W  +   L   TN IV+C S +   ++      L+ +++IV+  
Sbjct: 48  FSKRRKHFGIVCSVAEWSSLQKCL---TNQIVSCISHTVHPIKVSCDRVLY-LVEIVQSG 103

Query: 370 SLS 378
             S
Sbjct: 104 DRS 106


>SB_5852| Best HMM Match : 3_5_exonuc (HMM E-Value=3.4e-07)
          Length = 653

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 383 NCDKEAPR-TIFSTLNNASAAWYLTR 309
           NC  +AP  T+ STL    A WYL +
Sbjct: 366 NCQLQAPDGTVLSTLERKKADWYLDK 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,764,593
Number of Sequences: 59808
Number of extensions: 258590
Number of successful extensions: 613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)