Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0661
(487 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC125109-1|AAI25110.1| 782|Homo sapiens Vac14 homolog (S. cerev... 106 4e-23
BC125108-1|AAI25109.1| 782|Homo sapiens Vac14 homolog (S. cerev... 106 4e-23
BC072420-1|AAH72420.1| 887|Homo sapiens transportin 2 (importin... 31 2.8
BC018314-1|AAH18314.1| 771|Homo sapiens Unknown (protein for IM... 31 2.8
AF019039-1|AAB83973.1| 896|Homo sapiens transportin2 protein. 31 2.8
AF007748-1|AAB71349.1| 887|Homo sapiens karyopherin beta2b homo... 31 2.8
AB210011-1|BAE06093.1| 1051|Homo sapiens TNPO2 variant protein p... 31 2.8
U72395-1|AAB68948.1| 890|Homo sapiens MIP protein. 30 3.8
U72069-1|AAB58254.1| 890|Homo sapiens karyopherin beta2 protein. 30 3.8
U70322-1|AAC50723.1| 890|Homo sapiens transportin protein. 30 3.8
BC040340-1|AAH40340.1| 890|Homo sapiens transportin 1 protein. 30 3.8
>BC125109-1|AAI25110.1| 782|Homo sapiens Vac14 homolog (S.
cerevisiae) protein.
Length = 782
Score = 106 bits (255), Expect = 4e-23
Identities = 50/97 (51%), Positives = 66/97 (68%)
Frame = +1
Query: 196 KRSTYGSVYCSSGAWQGISSYLPELTNPIVACFSESESRVRYQAAEALFNVLKIVRGASL 375
K G CS + YL EL P++ CF++++SR+RY A EAL+N++K+ RGA L
Sbjct: 70 KGGLIGLAACSIALGKDSGLYLKELIEPVLTCFNDADSRLRYYACEALYNIVKVARGAVL 129
Query: 376 SQFPVIFDALAKLAADPEQQVKHAAELLDRLLKDIVT 486
F V+FD L+KLAADP+ VK +ELLDRLLKDIVT
Sbjct: 130 PHFNVLFDGLSKLAADPDPNVKSGSELLDRLLKDIVT 166
Score = 85.4 bits (202), Expect = 9e-17
Identities = 41/83 (49%), Positives = 58/83 (69%)
Frame = +2
Query: 2 RDYAPLSIACVRGLCDKLYEKRKVAGVEIEKMVKDFNDAKNTSQIKKLIKVLGQDLMSST 181
+D+APL+ VR L DKLYEKRKVA +EIEK+V++F NT QIK +I+ L Q+ S
Sbjct: 5 KDFAPLTPNIVRALNDKLYEKRKVAALEIEKLVREFVAQNNTVQIKHVIQTLSQEFALSQ 64
Query: 182 NPNMKNGALMGLSTVAVGLGKAS 250
+P+ + G L+GL+ ++ LGK S
Sbjct: 65 HPHSRKGGLIGLAACSIALGKDS 87
>BC125108-1|AAI25109.1| 782|Homo sapiens Vac14 homolog (S.
cerevisiae) protein.
Length = 782
Score = 106 bits (255), Expect = 4e-23
Identities = 50/97 (51%), Positives = 66/97 (68%)
Frame = +1
Query: 196 KRSTYGSVYCSSGAWQGISSYLPELTNPIVACFSESESRVRYQAAEALFNVLKIVRGASL 375
K G CS + YL EL P++ CF++++SR+RY A EAL+N++K+ RGA L
Sbjct: 70 KGGLIGLAACSIALGKDSGLYLKELIEPVLTCFNDADSRLRYYACEALYNIVKVARGAVL 129
Query: 376 SQFPVIFDALAKLAADPEQQVKHAAELLDRLLKDIVT 486
F V+FD L+KLAADP+ VK +ELLDRLLKDIVT
Sbjct: 130 PHFNVLFDGLSKLAADPDPNVKSGSELLDRLLKDIVT 166
Score = 85.4 bits (202), Expect = 9e-17
Identities = 41/83 (49%), Positives = 58/83 (69%)
Frame = +2
Query: 2 RDYAPLSIACVRGLCDKLYEKRKVAGVEIEKMVKDFNDAKNTSQIKKLIKVLGQDLMSST 181
+D+APL+ VR L DKLYEKRKVA +EIEK+V++F NT QIK +I+ L Q+ S
Sbjct: 5 KDFAPLTPNIVRALNDKLYEKRKVAALEIEKLVREFVAQNNTVQIKHVIQTLSQEFALSQ 64
Query: 182 NPNMKNGALMGLSTVAVGLGKAS 250
+P+ + G L+GL+ ++ LGK S
Sbjct: 65 HPHSRKGGLIGLAACSIALGKDS 87
>BC072420-1|AAH72420.1| 887|Homo sapiens transportin 2 (importin 3,
karyopherin beta 2b) protein.
Length = 887
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 226 SSGAWQGISSYLPELTNPIVACFSESESRVRYQAAEALFNVLK-IVRGASLSQFPVIFDA 402
+ G QG+ YLPEL ++ C S+ ++ VR A L +V +
Sbjct: 422 AEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTE 481
Query: 403 LAKLAADPEQQVKHAA 450
L K D ++V+ AA
Sbjct: 482 LLKRILDGNKRVQEAA 497
>BC018314-1|AAH18314.1| 771|Homo sapiens Unknown (protein for
IMAGE:4154236) protein.
Length = 771
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 226 SSGAWQGISSYLPELTNPIVACFSESESRVRYQAAEALFNVLK-IVRGASLSQFPVIFDA 402
+ G QG+ YLPEL ++ C S+ ++ VR A L +V +
Sbjct: 422 AEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTE 481
Query: 403 LAKLAADPEQQVKHAA 450
L K D ++V+ AA
Sbjct: 482 LLKRILDGNKRVQEAA 497
>AF019039-1|AAB83973.1| 896|Homo sapiens transportin2 protein.
Length = 896
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 226 SSGAWQGISSYLPELTNPIVACFSESESRVRYQAAEALFNVLK-IVRGASLSQFPVIFDA 402
+ G QG+ YLPEL ++ C S+ ++ VR A L +V +
Sbjct: 421 AEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTE 480
Query: 403 LAKLAADPEQQVKHAA 450
L K D ++V+ AA
Sbjct: 481 LLKRILDGNKRVQEAA 496
>AF007748-1|AAB71349.1| 887|Homo sapiens karyopherin beta2b homolog
protein.
Length = 887
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 226 SSGAWQGISSYLPELTNPIVACFSESESRVRYQAAEALFNVLK-IVRGASLSQFPVIFDA 402
+ G QG+ YLPEL ++ C S+ ++ VR A L +V +
Sbjct: 422 AEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTE 481
Query: 403 LAKLAADPEQQVKHAA 450
L K D ++V+ AA
Sbjct: 482 LLKRILDGNKKVQEAA 497
>AB210011-1|BAE06093.1| 1051|Homo sapiens TNPO2 variant protein
protein.
Length = 1051
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 226 SSGAWQGISSYLPELTNPIVACFSESESRVRYQAAEALFNVLK-IVRGASLSQFPVIFDA 402
+ G QG+ YLPEL ++ C S+ ++ VR A L +V +
Sbjct: 586 AEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTE 645
Query: 403 LAKLAADPEQQVKHAA 450
L K D ++V+ AA
Sbjct: 646 LLKRILDGNKRVQEAA 661
>U72395-1|AAB68948.1| 890|Homo sapiens MIP protein.
Length = 890
Score = 30.3 bits (65), Expect = 3.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 226 SSGAWQGISSYLPELTNPIVACFSESESRVR 318
+ G QG+ YLPEL ++ C S+ ++ VR
Sbjct: 425 AEGCMQGMIPYLPELIPHLIQCLSDKKALVR 455
>U72069-1|AAB58254.1| 890|Homo sapiens karyopherin beta2 protein.
Length = 890
Score = 30.3 bits (65), Expect = 3.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 226 SSGAWQGISSYLPELTNPIVACFSESESRVR 318
+ G QG+ YLPEL ++ C S+ ++ VR
Sbjct: 425 AEGCMQGMIPYLPELIPHLIQCLSDKKALVR 455
>U70322-1|AAC50723.1| 890|Homo sapiens transportin protein.
Length = 890
Score = 30.3 bits (65), Expect = 3.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 226 SSGAWQGISSYLPELTNPIVACFSESESRVR 318
+ G QG+ YLPEL ++ C S+ ++ VR
Sbjct: 425 AEGCMQGMIPYLPELIPHLIQCLSDKKALVR 455
>BC040340-1|AAH40340.1| 890|Homo sapiens transportin 1 protein.
Length = 890
Score = 30.3 bits (65), Expect = 3.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 226 SSGAWQGISSYLPELTNPIVACFSESESRVR 318
+ G QG+ YLPEL ++ C S+ ++ VR
Sbjct: 425 AEGCMQGMIPYLPELIPHLIQCLSDKKALVR 455
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,587,383
Number of Sequences: 237096
Number of extensions: 1190049
Number of successful extensions: 6307
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6307
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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