Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0658
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    28   1.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   1.3  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    28   1.7  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    27   2.2  
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone...    27   2.2  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.0  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    26   5.0  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   6.7  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   8.8  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    25   8.8  

>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 933

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +1

Query: 232  QQTLLDIMPSLIKEIKQKLKVPVTRAKKMPLRNQQFKQMGKFQQLRKKLKVQILVAPMM- 408
            Q  +L ++PSL+      +K       K+P+ N++ K+  K Q+L+ K  + ++ + M+ 
Sbjct: 857  QDEVLSVIPSLMYISMSSIKALYRTISKLPVVNEESKK--KLQRLQFKGSMLVMFSTMIE 914

Query: 409  SHQNRHLSPTKQLKNLTL 462
            S  +  +    Q + LTL
Sbjct: 915  SRLSPQILEYLQAEQLTL 932


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +1

Query: 226  KNQQTLLDIMPSLIKEIKQKLKVPVTRAKKMPLRNQQFKQMGKFQQLRKK-LKVQILVAP 402
            +  QTL+  + S I E+KQ + +  T   ++ ++  + K+  KF + R++ L+ +++ A 
Sbjct: 874  REHQTLVLQLQSNITELKQDITLQRTVRNQLEIQTTELKERLKFMEERQENLQSKLIAAN 933

Query: 403  MMSHQN 420
              + QN
Sbjct: 934  KDTTQN 939


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 365 SCWNFPICLNCWFLRGIFFARVTGTF-SFCFISLIKLGMMSKRVCWFLARGFALV 204
           +C N P  L   FL GIF A +T  F +   +   +     + +CW+   G A +
Sbjct: 161 ACRNGPSLLGLRFLAGIFEASITPAFINITAMWYRREEQPMRTLCWYAFNGIAQI 215


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 220 RAKNQQTLLDIMPSLIKEIKQKLKVPVTRAKKMPLRNQQFKQM 348
           R  ++Q + DI+ +  K    +  V + ++ K+PL+N++F  +
Sbjct: 35  RRYHRQEVADILNATSKSKHSEAVVEILKSAKVPLKNKEFSDL 77


>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
           regulator|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 195

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/73 (23%), Positives = 38/73 (52%)
 Frame = +1

Query: 148 VHQYLEKIDKSLAQTFMKKTKAKPRAKNQQTLLDIMPSLIKEIKQKLKVPVTRAKKMPLR 327
           + QY++K    +   ++ K    P+ KN+Q L+ I   L++++ +   V V  ++K+   
Sbjct: 113 IDQYVDKELSPMYDNYVNKPSNDPKQKNKQKLM-ISELLLQQLLKLDGVDVLGSEKLRFE 171

Query: 328 NQQFKQMGKFQQL 366
            +Q   + K Q++
Sbjct: 172 RKQL--VSKIQKM 182


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
 Frame = +1

Query: 130 ADVNSLVHQYLEKI-----DKSLAQTFMKKTKAKPRAKNQQTLLDIMPSLI---KEIKQK 285
           A ++ +V++  EK+        L     K+ K +PR  +      +    +   K  K  
Sbjct: 229 AHLDRIVYESFEKVMFQVEGGELTVLLDKEAKVRPRTNDVYEDFGLCNGYLEAKKLAKAN 288

Query: 286 LKVPVTRAKKMPLRNQQFK-QMGKFQQLRKKLKVQI----LVAPMMSHQNRHLSPTKQLK 450
           L  P+T AKKM   N+Q     G  +   +   V++    LV    + +N+ +S  +QL 
Sbjct: 289 LAEPITEAKKMNKENKQENVGAGDDEDASESPMVRVTHLLLVIQAFTIKNKEVSDDEQLC 348

Query: 451 NLTLHQLRNKNHQM 492
            L +H L + NH +
Sbjct: 349 FL-IH-LNDTNHNL 360


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/55 (21%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +1

Query: 199 KKTKAKPRAKNQQTLLDI--MPSLIKEIKQKLKVPVTRAKKMPLRNQQFKQMGKF 357
           K+ +A+ + + QQ ++ +      +KE++++  VP+ R +  P  N++ K+  ++
Sbjct: 181 KEEEARRQKEQQQGVVQVRQQKEYLKELERQKTVPLARYEDDPEYNKELKERSRW 235


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 509 DVTSKPKKQPVKPIKTNP 562
           +V S+PK  P KP++T P
Sbjct: 297 NVQSRPKNYPQKPVQTTP 314


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 418 NRHLSPTKQLKNLTLHQLRNKNHQMTAT 501
           N+H+ P+K   N  L +L +K   MT T
Sbjct: 763 NKHVQPSKHPSNHDLEELIHKYDAMTGT 790


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +1

Query: 265 IKEIKQKLKVPVTRAKKMPLRNQQFKQMGKFQQLRKKLKVQI--LVAPMMSHQNRHLSPT 438
           I  +KQ  K   + + +  L NQQ +Q+     L KKL  ++  +          H +  
Sbjct: 257 IAVLKQNTKEQKSGSSQDDLSNQQKQQLDFMDSLNKKLSTELESIKEASRKEMETHCATI 316

Query: 439 KQLKNLTLHQLRNKNHQMT 495
           + L+N      + K   +T
Sbjct: 317 QTLENEVKEARKVKEESLT 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,020
Number of Sequences: 5004
Number of extensions: 41088
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)