Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0658
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    29   5.3  

>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/99 (22%), Positives = 43/99 (43%)
 Frame = +1

Query: 187 QTFMKKTKAKPRAKNQQTLLDIMPSLIKEIKQKLKVPVTRAKKMPLRNQQFKQMGKFQQL 366
           Q  ++ TK  P+A     L  +    I +++Q+ +      K +PL+  Q +Q  + QQ 
Sbjct: 264 QHLLQLTKQNPQAAAAAQLNLLQQQRILQMQQQQQQQQQILKNLPLQRNQLQQQQQQQQQ 323

Query: 367 RKKLKVQILVAPMMSHQNRHLSPTKQLKNLTLHQLRNKN 483
           +++L  Q  +      ++    P    K LT +    +N
Sbjct: 324 QQQLLRQQSLNMRTPGKSAPYEPGTCAKRLTHYMYHQQN 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,635,434
Number of Sequences: 37544
Number of extensions: 237431
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)