Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0658
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical pr...    31   0.88 
Z46241-5|CAA86321.1|  279|Caenorhabditis elegans Hypothetical pr...    31   0.88 
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    31   1.2  
U97012-3|AAK39144.2|  588|Caenorhabditis elegans Groundhog (hedg...    29   3.6  

>Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical
           protein M162.7 protein.
          Length = 690

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/43 (34%), Positives = 28/43 (65%)
 Frame = +1

Query: 259 SLIKEIKQKLKVPVTRAKKMPLRNQQFKQMGKFQQLRKKLKVQ 387
           +L+K++  K+  P+ + +K+P   + FK++ KF +LRK L  Q
Sbjct: 209 NLLKDV-DKMSEPLEQLQKLPSVFEPFKEVSKFMRLRKTLPHQ 250


>Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical
           protein T05D4.5 protein.
          Length = 482

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
 Frame = +1

Query: 127 QADVNSLVHQYLEKIDKS-LAQTFMKKTKAKPRAKNQQTLLDIMPSLIKE--IKQKL--- 288
           + D +    QY+ K+ K+  A++F KK KA+   +  + + +I    I E  I++++   
Sbjct: 246 EEDRDQFHFQYMRKVLKTDEAESFAKKLKAEKVERLDKKIDEIKARKIDEKLIEREIVRA 305

Query: 289 KVPVTRAKKMPLRNQQF---KQMGKFQQLRKKLKVQILVAPMMSHQNRHLSPTKQLK 450
           + P    K   LR ++F   ++  K  +  +KLKV     PM+SH +  +   K  K
Sbjct: 306 ESPKFEPKTRRLRVEKFFNQQKQKKENEWMEKLKVDASRKPMLSHWDLEMKNIKAEK 362


>Z46241-5|CAA86321.1|  279|Caenorhabditis elegans Hypothetical
           protein C38D4.7 protein.
          Length = 279

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 20/120 (16%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
 Frame = +1

Query: 142 SLVHQYLEKIDKSLAQTFMKKTKAKPRAKNQQTLLDIMPSLIKE--IKQKLKVPVTRAKK 315
           +LVH  +E++D+S A ++    +  P + + +    +  +++++  + ++   PV  AK+
Sbjct: 136 ALVHSLVERVDRSHASSYDVVGQKNPSSSSLKPAKRVKSAVVRQSNLAKRTGAPVDAAKE 195

Query: 316 M-PLRNQQFKQMGKFQQLRKKLKVQILVAPMMSHQNRHLSPTKQLKNLTLHQLRNKNHQM 492
           +  +R+++ +  G+  + R  + +  ++    S  ++ L   K  +  T +++     Q+
Sbjct: 196 LKKIRDEENRNHGRSAE-RDNVFIGAVLVGKGSQYDKDLEKFKSFRCRTCNEVSQTKEQL 254


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
 Frame = +1

Query: 85  ILDKNFKMNLTTEIQADVNSLVHQYLEKIDKSLAQTFMKKTKAKPRAKNQQTLLDIMPSL 264
           I + NF+  ++ E  + +   +HQ  EK+ +    TF + T+  P  +N+  +    PS 
Sbjct: 269 IEEDNFESTISIEKCSKLGIFLHQNAEKLARCQVDTFQRITRDLPPFRNKVLIFHSAPSC 328

Query: 265 IKEIKQKLKVPVTRAKKMPL---RNQQF----KQMGKFQQLRKKLKVQILVAPMMSHQNR 423
                 KL      +K   L   R Q+     +++GK    RK  +   LV  M+ + N+
Sbjct: 329 GGTTVGKLLQACDNSKLSLLVLARIQECAPSRRKIGKLGYRRK--EELFLVFYMIFNSNK 386

Query: 424 HLSPTKQL---KNLT 459
            L P+  +   KNLT
Sbjct: 387 PLWPSNSVPGSKNLT 401


>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +1

Query: 259 SLIKEIKQKLKVPVTRAKKMPLRNQQFKQMGKF--QQLRKKLKVQILVAPMMSHQNRHLS 432
           S  KE+ + L+  +T A+   +  Q     GK+    LRK L +  L   ++ H+   L+
Sbjct: 99  SSCKEVSENLQFCITCAQSQDILKQPSNN-GKWIAVPLRKDLSIICLSCGVLEHKEHELA 157

Query: 433 PTKQLKNL 456
           P   L+NL
Sbjct: 158 PIDMLENL 165


>U97012-3|AAK39144.2|  588|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 9 protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 199 KKTKAKPRAKNQQTLLDIMPSLIKEIKQKLKVPVTRAKKM 318
           + T  KP A +Q T+LD +    K+  + +++PV R KK+
Sbjct: 370 ESTTIKPNAVSQPTILDFV-ERSKQQNKLMRIPVYRGKKL 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,008,482
Number of Sequences: 27780
Number of extensions: 232978
Number of successful extensions: 862
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)