Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0658
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he...    29   3.3  
At1g52420.1 68414.m05917 glycosyl transferase family 1 protein c...    29   3.3  
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa...    29   4.4  
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g...    28   5.8  
At1g19220.1 68414.m02392 transcriptional factor B3 family protei...    28   5.8  
At2g16015.1 68415.m01836 hypothetical protein                          28   7.7  

>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
           helicase -Mus musculus,PIR2:I84741
          Length = 621

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 330 PTIQTNGKVPATKKKAEXXXXXXXXXEPPKQASKPNQAVKK 452
           P   T GK P  K  +           PP+++SKP + + K
Sbjct: 543 PARSTGGKTPVRKSSSSSFSKPRKASSPPEKSSKPKRKILK 583


>At1g52420.1 68414.m05917 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 670

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +1

Query: 106 MNLTTEIQADVNSLVHQYLEKIDKSLAQ-TFMKKTKAKPRAKNQQTLLDIMPSLIKEIKQ 282
           +N+T +  A  N      L K D  +++ +   K K +   +  ++ + +   +IKE+ +
Sbjct: 117 VNITGKDDAGSNKRTDVSLIKKDDGVSRRSLSSKQKTRKTVRTSRSKIRVKQKVIKEVLE 176

Query: 283 KLKVPVTRAKKMPLRNQQF-KQMGKFQQLRKKL 378
              +   +  ++PL N  + K +G F  L  K+
Sbjct: 177 TKDLDDEQDPQLPLTNATYGKLLGPFGSLEDKV 209


>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
           family protein similar to arabinogalactan protein
           [Daucus carota] GI:11322245; contains Pfam profile
           PF01190: Pollen proteins Ole e I family
          Length = 359

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/60 (30%), Positives = 23/60 (38%)
 Frame = +2

Query: 524 PKKQPVKPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQTNSKTPIK 703
           P K PVKP  + P +PP                     +  V  P K PVK   +K P+K
Sbjct: 103 PTKPPVKPPVSPPAKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPP-TKPPVK 161


>At1g69830.1 68414.m08034 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative similar to
           SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
           (1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
           alpha-amylase [Malus x domestica] GI:7532799; contains
           Pfam profile PF00128: Alpha amylase, catalytic domain
          Length = 887

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 564 YVHHKKK--RNHQMTIVVMMNLRKRFHKNQLLH 656
           Y+ H  K  R ++  I + +NLR  F  N+LLH
Sbjct: 14  YLRHNSKVNRGNRSFIPISLNLRSHFTSNKLLH 46


>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profile: PF02309 AUX/IAA family
          Length = 1086

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/75 (25%), Positives = 39/75 (52%)
 Frame = +1

Query: 142 SLVHQYLEKIDKSLAQTFMKKTKAKPRAKNQQTLLDIMPSLIKEIKQKLKVPVTRAKKMP 321
           S +H   + + ++  Q  M++  +KP + +QQ  L ++  L ++ +Q+   PV+ + +  
Sbjct: 615 SSLHSLQQNLSQNPQQLQMQQQSSKP-SPSQQLQLQLLQKLQQQQQQQSIPPVSSSLQPQ 673

Query: 322 LRNQQFKQMGKFQQL 366
           L   Q  Q  + QQL
Sbjct: 674 LSALQQTQSHQLQQL 688


>At2g16015.1 68415.m01836 hypothetical protein
          Length = 111

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +1

Query: 220 RAKNQQTLLDIMPSLIKEIKQKLKVPV-TRAKKMPLRNQQFKQMGKFQQLRKKLKVQILV 396
           R +  + L D +  L+ ++KQKL VP+  ++ K   + +  K++G  + L + ++   LV
Sbjct: 28  RRERLKLLSDDIKKLLLDVKQKLLVPIDEKSSKKKKQKKNKKKIGLEKFLIEIIQQDALV 87

Query: 397 APMMSHQNRHLS 432
             M+ H + H S
Sbjct: 88  --MVLHAHAHPS 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,524
Number of Sequences: 28952
Number of extensions: 208527
Number of successful extensions: 677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)