Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0656
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   4e-15

>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 35/42 (83%), Positives = 38/42 (90%)
 Frame = +2

Query: 509 GHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGLKDKETRF 634
           G PGKTKKGELSI+P ++ LLAPCLHMLPHLHFGLKDK TRF
Sbjct: 657 GKPGKTKKGELSILPSSVTLLAPCLHMLPHLHFGLKDK-TRF 697



 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 35/73 (47%), Positives = 48/73 (65%)
 Frame = +3

Query: 315 LENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDKLRRGD 494
           L + +L    R+H+ R SG+KL+FYDLR EG+K+QVMA+A+   +E  F    DK+RRGD
Sbjct: 594 LTSCSLQDQRRIHAKRASGSKLLFYDLRGEGSKLQVMADAR--ASEQDFNAVHDKIRRGD 651

Query: 495 IIGCVAIQVKLRK 533
           IIG      K +K
Sbjct: 652 IIGVKGKPGKTKK 664



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +1

Query: 130 EKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFKLA 261
           EKK    EE + PN+Y+K+RS AV ALK    ++ PYPHKF ++
Sbjct: 60  EKKKEIDEESLDPNQYFKIRSLAVEALKK--TDEPPYPHKFHVS 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,166,592
Number of Sequences: 59808
Number of extensions: 336774
Number of successful extensions: 659
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)