Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0656
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna ...   110   9e-25
U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna ...   110   9e-25
U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna ...   110   9e-25
Z22176-7|CAA80137.1|  910|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform c protein.
          Length = 514

 Score =  110 bits (265), Expect = 9e-25
 Identities = 50/75 (66%), Positives = 58/75 (77%)
 Frame = +2

Query: 509 GHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGLKDKETRFRKRYLDLILNDKVRQIFY 688
           G   +TK GELS+IP  I  L PCLHMLPH HFGLKDKE RFRKRYLDLILN +V+  F 
Sbjct: 107 GRATRTKAGELSLIPNEILQLTPCLHMLPHSHFGLKDKELRFRKRYLDLILNPRVKDNFV 166

Query: 689 TRAKIIAYVRRFLDN 733
            R+KII ++RR+LDN
Sbjct: 167 IRSKIITFLRRYLDN 181



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 40/79 (50%), Positives = 55/79 (69%)
 Frame = +3

Query: 267 LEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYE 446
           L +FI KY  L    V+E + +SVAGR+HS RESG+KL+FYD+  EG  IQ+MANAK + 
Sbjct: 27  LTDFITKYTPLEKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEGTHIQIMANAKFHT 85

Query: 447 TEDKFFKDTDKLRRGDIIG 503
            +  F    D+++RGDI+G
Sbjct: 86  GDVDFVTLHDRIKRGDIVG 104


>U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform b protein.
          Length = 596

 Score =  110 bits (265), Expect = 9e-25
 Identities = 50/75 (66%), Positives = 58/75 (77%)
 Frame = +2

Query: 509 GHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGLKDKETRFRKRYLDLILNDKVRQIFY 688
           G   +TK GELS+IP  I  L PCLHMLPH HFGLKDKE RFRKRYLDLILN +V+  F 
Sbjct: 189 GRATRTKAGELSLIPNEILQLTPCLHMLPHSHFGLKDKELRFRKRYLDLILNPRVKDNFV 248

Query: 689 TRAKIIAYVRRFLDN 733
            R+KII ++RR+LDN
Sbjct: 249 IRSKIITFLRRYLDN 263



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 40/79 (50%), Positives = 55/79 (69%)
 Frame = +3

Query: 267 LEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYE 446
           L +FI KY  L    V+E + +SVAGR+HS RESG+KL+FYD+  EG  IQ+MANAK + 
Sbjct: 109 LTDFITKYTPLEKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEGTHIQIMANAKFHT 167

Query: 447 TEDKFFKDTDKLRRGDIIG 503
            +  F    D+++RGDI+G
Sbjct: 168 GDVDFVTLHDRIKRGDIVG 186



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 121 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFKL 258
           VA   K  ++ +   P EY+ +R   + A +     D+P+PHKF +
Sbjct: 62  VADAPKVVREADPSDPQEYFNMRVRMIEARRAA--GDNPFPHKFNV 105


>U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform a protein.
          Length = 572

 Score =  110 bits (265), Expect = 9e-25
 Identities = 50/75 (66%), Positives = 58/75 (77%)
 Frame = +2

Query: 509 GHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGLKDKETRFRKRYLDLILNDKVRQIFY 688
           G   +TK GELS+IP  I  L PCLHMLPH HFGLKDKE RFRKRYLDLILN +V+  F 
Sbjct: 165 GRATRTKAGELSLIPNEILQLTPCLHMLPHSHFGLKDKELRFRKRYLDLILNPRVKDNFV 224

Query: 689 TRAKIIAYVRRFLDN 733
            R+KII ++RR+LDN
Sbjct: 225 IRSKIITFLRRYLDN 239



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 40/79 (50%), Positives = 55/79 (69%)
 Frame = +3

Query: 267 LEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYE 446
           L +FI KY  L    V+E + +SVAGR+HS RESG+KL+FYD+  EG  IQ+MANAK + 
Sbjct: 85  LTDFITKYTPLEKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEGTHIQIMANAKFHT 143

Query: 447 TEDKFFKDTDKLRRGDIIG 503
            +  F    D+++RGDI+G
Sbjct: 144 GDVDFVTLHDRIKRGDIVG 162



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 121 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFKL 258
           VA   K  ++ +   P EY+ +R   + A +     D+P+PHKF +
Sbjct: 38  VADAPKVVREADPSDPQEYFNMRVRMIEARRAA--GDNPFPHKFNV 81


>Z22176-7|CAA80137.1|  910|Caenorhabditis elegans Hypothetical
           protein ZK1098.8 protein.
          Length = 910

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -3

Query: 718 PNIRYDF----SSCIKDLSNLIIQNK-VQIPFSKAGFFVFETEM*MRQHM 584
           PN+  DF     S +++   L+++ K +Q+P +    FVFE E   + HM
Sbjct: 357 PNVMRDFFRQPDSKLREAKELLVRRKTLQVPLNGEQLFVFENERRTQIHM 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,673,792
Number of Sequences: 27780
Number of extensions: 278325
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)