Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0655
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56670.1 68416.m06303 hypothetical protein hypothetical prote...    28   5.2  
At3g09470.2 68416.m01126 expressed protein                             28   5.2  
At3g09470.1 68416.m01125 expressed protein                             28   5.2  

>At3g56670.1 68416.m06303 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 233

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 189 RKLASPCHPQVLLILYTYCVFTKINKLINLLGYTTSERMYCSRDKYGNKPN 37
           R L + C  ++L   + YC++   +KL+ +L Y          D  G  PN
Sbjct: 159 RILGATCGGEILFAKWMYCIYHYEDKLLCVLYYEPKRNSMRGVDVEGTLPN 209


>At3g09470.2 68416.m01126 expressed protein
          Length = 437

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = -3

Query: 646 LIIWQNIAISLLAYVTPYVSL 584
           L +WQ+ AI+++ +++PY+SL
Sbjct: 384 LKVWQSAAIAIVFFLSPYISL 404


>At3g09470.1 68416.m01125 expressed protein
          Length = 464

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = -3

Query: 646 LIIWQNIAISLLAYVTPYVSL 584
           L +WQ+ AI+++ +++PY+SL
Sbjct: 384 LKVWQSAAIAIVFFLSPYISL 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,805,719
Number of Sequences: 28952
Number of extensions: 226928
Number of successful extensions: 361
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)