Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0654
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   1.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 22/106 (20%), Positives = 41/106 (38%)
 Frame = +1

Query: 217 LPENSRVSNQSTNERIVQSFFAESHDDRVNFLQFMRVLAHFRPIKKNRENKLNCREEKLR 396
           L  ++R+ +Q  + +        SH DR N     R         +N + +  CR   L 
Sbjct: 220 LYNHARLMSQDNHSKEYLVSIMFSHYDRNNNGNLER--EELEQFAENEDLEELCRGCNLG 277

Query: 397 FAFSMYDLDSDGKISRDELLAILHMMVGANISEEQLTILLNEQSLK 534
              S  D D DGK++ +E       +   ++     ++ +N  S +
Sbjct: 278 HMISYDDTDGDGKLNVNEFYMAFSKLYSVSVVSLDKSLEVNHISAR 323



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 170 FTSLDKNDCGTLSREDFLRIPELAINPLTRELC 268
           F+  D+N+ G L RE+   + + A N    ELC
Sbjct: 242 FSHYDRNNNGNLEREE---LEQFAENEDLEELC 271


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 521 SFSNIVSCSSLILAPTIMCSIARSSS 444
           +F NIVSCS   + P  +  ++R  S
Sbjct: 357 AFCNIVSCSPQTVHPETIIDVSRRRS 382


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -2

Query: 670 MYLMYAVQEFGGQLRNRMDIFCSTSVLSRARQNSSKDII 554
           MY+ + + ++ G LRNR +            +N  K+++
Sbjct: 415 MYIAFIILQYAGLLRNRSEYLNHLRANVAEGRNQRKNVL 453


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 266 CNHSLLKATMTELTSCSS 319
           CN + LKA    L++CSS
Sbjct: 42  CNEASLKAHKVVLSACSS 59


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 340  RPIKKNRENKLNCREEKLRF 399
            RP+K+++EN+ N   ++ R+
Sbjct: 1646 RPMKESQENQQNAETQRERY 1665


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 340  RPIKKNRENKLNCREEKLRF 399
            RP+K+++EN+ N   ++ R+
Sbjct: 1642 RPMKESQENQQNAETQRERY 1661


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,631
Number of Sequences: 438
Number of extensions: 4720
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)