Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0652
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    28   0.089
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 0.089
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 539 GPEGTGPNILVDCSKGVQYLNEIKDSVVA 625
           GP   GP+ ++D + GV Y  +I  + +A
Sbjct: 294 GPNSQGPSSVIDTNTGVDYFTQINRNGIA 322


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 39  HHFQECPQHEGDEIQCITSRACRC 110
           HH    P+  G +++ I   AC C
Sbjct: 464 HHHPHPPETPGPQVETILQNACFC 487


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 580 GAIHQDVGAGTLGAKAPNLTGFGNSYSYFS 491
           G  H  V AG +GA+ P+   +GN+ +  S
Sbjct: 897 GINHGPVTAGVIGARKPHYDIWGNTVNVAS 926


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 372 NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEY 506
           N H  +F+    +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 372 NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEY 506
           N H  +F+    +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 532 PNLTGFGNSYSYFSVRYRARVL 467
           P++  F N+   + VRY++ VL
Sbjct: 111 PDIVLFNNADGNYEVRYKSNVL 132


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 604 FIEVLDSFGAIHQDVGAGTLGAKAPNLTGFGNSYSYFSV 488
           F+E LD+   +  +V       KAPN  G  N    F V
Sbjct: 791 FMESLDNHWILRSNVQQCEQLEKAPNTLGLKNMAGVFIV 829


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = +3

Query: 402 QPMPDGLPEDIDEGRVNPRD------DFKTRARYLTEKYEYELPKPVRFGALAPRVPAP 560
           +P+P+ L ED+   +V PR       D       + EK ++ L   V    L+P  P+P
Sbjct: 20  KPLPENLKEDLIVYQVYPRSFKDSNGDGIGDIEGIKEKLDHFLEMGVDMFWLSPIYPSP 78


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = +3

Query: 402 QPMPDGLPEDIDEGRVNPRD------DFKTRARYLTEKYEYELPKPVRFGALAPRVPAP 560
           +P+P+ L ED+   +V PR       D       + EK ++ L   V    L+P  P+P
Sbjct: 20  KPLPENLKEDLIVYQVYPRSFKDSNGDGIGDIEGIKEKLDHFLEMGVDMFWLSPIYPSP 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,768
Number of Sequences: 438
Number of extensions: 4098
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)