Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0651
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   6.5  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   6.5  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   6.5  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    25   8.6  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -2

Query: 665 YIVFCIKSVQFSTIFKIKLICGIIWYRQYFSHKYCQKSVILFYFIFLVYLCFA 507
           Y V  + S  F +IF    +  + W   Y  + +    + LFY   L+ L F+
Sbjct: 385 YTVCFVVSCIFVSIFDTLTVLLLTWINPYVINSHTGLILALFYLTNLIALAFS 437


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 617 IKLICGI-IWYRQYFSHKYCQKSVILFYFIFLVYLCFATIEKINTY 483
           + + C + I Y + F H        +  FIFL+YL F  +   +TY
Sbjct: 347 VLIFCKLFIHYNERFFHYLIDTDRAIDLFIFLLYLSFEYLGDPSTY 392


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 551 VILFYFIFLVYLCFATIEKINTYIILSYFIRQI 453
           ++L    +++Y+CF T   I + IIL  ++  +
Sbjct: 28  LVLSLIFYILYICFGTTSYILSGIILGAYVNSL 60


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 109 TRFGHFIDVKLIFII*NTRWTPPLSSDG 192
           T FGH   V  + +  N RW    SSDG
Sbjct: 49  TLFGHEKSVTCVSVSPNKRWIATSSSDG 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,134
Number of Sequences: 5004
Number of extensions: 59597
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)