Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0651
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430...    29   5.1  
02_01_0591 + 4384246-4384434,4384531-4384658,4384741-4384778,438...    28   6.8  
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317...    28   9.0  

>03_05_0976 -
           29341981-29342229,29342388-29342621,29342771-29343046,
           29343181-29343457,29343549-29343847,29344021-29344152,
           29344451-29344660,29344812-29344875,29346114-29346260,
           29346477-29346760
          Length = 723

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 659 VFCIKSVQFSTIFKIKLICGIIWYRQYFSHKY 564
           VF IK    S+ F + LI G + + QY  H++
Sbjct: 600 VFTIKHATISSGFTVLLIIGTVLFHQYCRHRF 631


>02_01_0591 +
           4384246-4384434,4384531-4384658,4384741-4384778,
           4385248-4385358,4386266-4386345,4386910-4386946,
           4387230-4387271,4387555-4387595,4387645-4387746
          Length = 255

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -1

Query: 225 CIRAQTSKETQSIRTKGRGPSSVLDYKNQFHIYEMSKTCVNGVLKNIRCCKVTVL 61
           C R +T+K    +R   +GP SV D+  +  +  +    +   +   RC K+ ++
Sbjct: 59  CYRLKTTKRAGWVRRGVQGPESVADHMYRMGVMALVAADLPSGVNRDRCVKMAIV 113


>04_04_0939 -
           29530242-29531087,29531406-29531597,29531690-29531770,
           29532300-29532428,29532579-29532650,29532761-29532829,
           29533809-29533891,29534101-29534203,29534289-29534402,
           29536230-29536274
          Length = 577

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 242 SITGTPVSEHRPQKRHNP 189
           S T TP+SEH P K  NP
Sbjct: 432 SQTPTPISEHHPAKHFNP 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,910,451
Number of Sequences: 37544
Number of extensions: 309686
Number of successful extensions: 509
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)