Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0651
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11551| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_59255| Best HMM Match : aPHC (HMM E-Value=0.88)                     28   6.9  
SB_31939| Best HMM Match : 7tm_2 (HMM E-Value=0.63)                    28   6.9  

>SB_11551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = -2

Query: 680 DYIGIYIVFC-----IKSVQFSTIFKIKLICGIIWYRQYFSHKYCQKSVILFYFIFLVYL 516
           +Y GI ++FC      + +QF+      + CGI  YR + +      +V L     ++  
Sbjct: 408 NYCGIRVIFCRTRVNYRGIQFNYRGSRVIFCGIAGYRTFITRSRSSAAVALESAFLVMIN 467

Query: 515 CFATIEKINTYIILSYF 465
           C A     NT +++++F
Sbjct: 468 CLAFAG--NTIVVVAFF 482


>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -2

Query: 653 CIKSVQFSTIFKI---KLICGIIWYRQYFSHKYCQKSVILFYFIFLVYLCFATIEK 495
           C +  +FS + +I     +   IW R+   H      V+L   + L+ LC  +I++
Sbjct: 103 CYRDSEFSAVLRIIHKNPVLNFIWKRKLVLHALGAAGVLLLVVLVLMCLCIRSIKR 158


>SB_59255| Best HMM Match : aPHC (HMM E-Value=0.88)
          Length = 213

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/48 (20%), Positives = 29/48 (60%)
 Frame = +3

Query: 327 LAFKLYKSQNLLILQESVLKV*HVIFLIKLIIFPTFIFYQLHYLSYKV 470
           +AF +Y+   ++ +   VLK+  +++ +  I+F  +  +++ ++ Y+V
Sbjct: 48  IAFIVYQVLKIVFIVYQVLKIVFIVYQVLKIVFIVYQVFKIAFIVYQV 95


>SB_31939| Best HMM Match : 7tm_2 (HMM E-Value=0.63)
          Length = 187

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 563 CQKSVILFYFIFLVYLCFATIEKINTYIIL 474
           C+   +L +++FLV  C+   E I  YI+L
Sbjct: 16  CRVIAVLLHYLFLVVFCWMAAEGIILYIML 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,741,238
Number of Sequences: 59808
Number of extensions: 407147
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)