Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0651
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.2  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 144 NQFHIYEMSKTCVNGVLKNIRCCKVTVLMQNN 49
           N + +   SK  ++ + KN++CC V  L   N
Sbjct: 124 NGYFLNSESKDFIDFIQKNLQCCGVHSLSDYN 155


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
 Frame = +3

Query: 417 IIFPTF-----IFYQLHYLSYKVR*NYVCIN 494
           I+FP F     +FY   YLS   R NY  +N
Sbjct: 429 IVFPLFFLAINVFYWFAYLSRSERINYYNVN 459


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 183 TKGRGPSSVLDYKNQFHIYEMSKTCVNGV 97
           + G GP   +DY+N   +Y+     +NG+
Sbjct: 293 SNGLGPIKDIDYENVQSLYQPHLRGLNGL 321


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 289 SFLFEILCSHIVFS 330
           S +FE LC+HI +S
Sbjct: 147 SGMFEALCNHIKYS 160


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -1

Query: 300  KQETRPKLKSVQCEIRCLYFYNWNSCIRAQTSKETQSIRTKGRGP 166
            +  T  +LK + C      +   ++ I +  S    S+RT+G+ P
Sbjct: 1455 RHATSHELKGLLCGNTYQLYLTSHNKIGSSPSSPVLSVRTQGQAP 1499


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -1

Query: 300  KQETRPKLKSVQCEIRCLYFYNWNSCIRAQTSKETQSIRTKGRGP 166
            +  T  +LK + C      +   ++ I +  S    S+RT+G+ P
Sbjct: 1451 RHATSHELKGLLCGNTYQLYLTSHNKIGSSPSSPVLSVRTQGQAP 1495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,700
Number of Sequences: 438
Number of extensions: 3986
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)