Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0651
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27420.1 68417.m03941 ABC transporter family protein D.melano...    29   2.4  
At5g48657.1 68418.m06020 defense protein-related weak similarity...    29   4.3  
At5g24180.1 68418.m02845 lipase class 3-related                        28   7.5  
At5g01670.2 68418.m00084 aldose reductase, putative similar to a...    27   9.9  
At5g01670.1 68418.m00083 aldose reductase, putative similar to a...    27   9.9  
At1g61250.1 68414.m06902 secretory carrier membrane protein (SCA...    27   9.9  

>At4g27420.1 68417.m03941 ABC transporter family protein
           D.melanogaster P element CaSpeR-1 gene (white
           protein),PID:g870996
          Length = 639

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -2

Query: 641 VQFSTIFKIKLICGIIWYRQYFSHKYCQKSVILFYFIFLVYLCFATIEKINTY 483
           ++ + IF +  +CG++W++   S    Q  + L +FI   +  F   ++I T+
Sbjct: 391 MKVAQIFIVSFLCGLLWWQTKISR--LQDQIGLLFFISSFWAFFPLFQQIFTF 441


>At5g48657.1 68418.m06020 defense protein-related weak similarity to
           SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis
           thaliana}
          Length = 245

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 620 KIKLIC-GIIWYRQYFSHKYCQKSVILFYFIFLVYLCFATIEKINTYIIL 474
           ++ L+C G+++       K  +  + LFY I   ++CF  I   N ++IL
Sbjct: 193 QLTLLCVGLLFSSMEPKGKLMKMIISLFYIILFFFICFCLIFFNNIFVIL 242


>At5g24180.1 68418.m02845 lipase class 3-related
          Length = 375

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 213 QTSKETQSIRTKGRGPSSVLDYKNQFHIYEMSKTCVNGV 97
           + SK+T +    G    + +D+ NQ+H   ++ + VNGV
Sbjct: 15  RASKDTDTFNIFGPFHLTSIDWNNQYHRTSVASSLVNGV 53


>At5g01670.2 68418.m00084 aldose reductase, putative similar to
           aldose reductase [Hordeum vulgare][GI:728592], aldose
           reductase ALDRXV4 [Xerophyta viscosa][GI:4539944]
          Length = 349

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = -1

Query: 279 LKSVQCEIRCLYFYNWNSCIRAQTSKETQSIRTKGRGPSSVLDYKNQFHIYEMSKTCVNG 100
           LK +Q E   LY  +W   +R   SK  ++          VLD+  +    EM     + 
Sbjct: 134 LKELQLEYLDLYLIHWPIRLREGASKPPKA--------GDVLDFDMEGVWREMENLSKDS 185

Query: 99  VLKNIRCCKVTVLMQN 52
           +++NI  C  TV   N
Sbjct: 186 LVRNIGVCNFTVTKLN 201


>At5g01670.1 68418.m00083 aldose reductase, putative similar to
           aldose reductase [Hordeum vulgare][GI:728592], aldose
           reductase ALDRXV4 [Xerophyta viscosa][GI:4539944]
          Length = 322

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = -1

Query: 279 LKSVQCEIRCLYFYNWNSCIRAQTSKETQSIRTKGRGPSSVLDYKNQFHIYEMSKTCVNG 100
           LK +Q E   LY  +W   +R   SK  ++          VLD+  +    EM     + 
Sbjct: 107 LKELQLEYLDLYLIHWPIRLREGASKPPKA--------GDVLDFDMEGVWREMENLSKDS 158

Query: 99  VLKNIRCCKVTVLMQN 52
           +++NI  C  TV   N
Sbjct: 159 LVRNIGVCNFTVTKLN 174


>At1g61250.1 68414.m06902 secretory carrier membrane protein (SCAMP)
           family protein (SC3) contains Pfam domain, PF04144:
           SCAMP family
          Length = 289

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 668 IYIVFCI-KSVQFSTIFKIKLICGIIWYRQYFSHKYCQKSVILFYFIFLVYLCFATIEKI 492
           ++I FC+  +V    +FK K + GI+      S    Q  V +FYFI   + C  ++  I
Sbjct: 201 LHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSG---QAIVGIFYFIGFAFFCLESVVSI 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,487
Number of Sequences: 28952
Number of extensions: 282905
Number of successful extensions: 543
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)