Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0650
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.37 
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   2.0  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.5  

>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 223 EYHTEELNQSDTDSNAGEHHTNVLHVNNQFSKTSLRVEVGRVLGAGR 83
           +Y  E+L  SD DS+   HH N + + N+ ++    +   R + AGR
Sbjct: 76  QYCLEKLASSDNDSSVHNHHDNSV-LRNEDTQLQPHIVCNRTVRAGR 121


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +3

Query: 546 KCAQDRRLILETFPLSNIDPVFPLYSNIY*SIIVMCSSTSLLTVV 680
           +C  +   +++++ L     +FPLYS+ + +++  C    LL+++
Sbjct: 505 QCRMEHPNVVKSYDLCIDSHIFPLYSDTWCAVMDFCPRGDLLSLI 549


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 138 SLVRHPFEWKLVEFSVQAA 82
           SLVRHP   K++ F +Q+A
Sbjct: 150 SLVRHPHRLKMLPFGIQSA 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,542
Number of Sequences: 5004
Number of extensions: 48397
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)