Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0650
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47462| Best HMM Match : Ras (HMM E-Value=0)                         30   1.6  
SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44)           30   2.1  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35)                  28   6.4  
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)                 28   8.4  

>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
          Length = 385

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/76 (18%), Positives = 29/76 (38%)
 Frame = +2

Query: 35  IPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLVVHMKDXXXXXXXXXXXXXXXXXXX 214
           +P +CC   ++    +   +   T    +GC    V + +D                   
Sbjct: 306 VPESCCKDTKVKSCNLEVLSHPETINSEQGCYGAAVKYFEDKLVIIGGVALGLAVFQLIG 365

Query: 215 XXFACCLARSIRSHMK 262
             F+CCLA ++ +++K
Sbjct: 366 IAFSCCLASTLHNNLK 381


>SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44)
          Length = 454

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -2

Query: 257 YGCEWNERGSMRISHRGAEPKRYRLQRRRAPYQCPSCEQ 141
           Y CE  ERG    SH  A     R      P+QCP C +
Sbjct: 366 YKCEVCERG---FSHSSAVKNHMRTHTGEKPFQCPICNK 401


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 600  RYSRE-ERFLKSVFCPEHTCQCCAIV 526
            R+S E ERF   V+CP   C CC+ V
Sbjct: 925  RFSPEGERFNSFVYCPGIDCLCCSTV 950


>SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35)
          Length = 806

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 250 ANGTSEAACEYHTEELNQ-SDTDSNAGEHHTNVLHVNNQFSKTSLRVEVGRVLGAGRDDA 74
           ANG++EAA EYH +  ++ + T S   E  T+       +     R+   R  G  R  A
Sbjct: 620 ANGSAEAADEYHQKTAHEPTSTPSTLVERITSPEPPARAYRPQKDRLGTTRADGNNRSSA 679

Query: 73  VIDLLGGAAR 44
            + L G   R
Sbjct: 680 QVVLEGACIR 689


>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
          Length = 856

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 300 MIKPLLIRITKFNSISLPTYI*CLNVYCDKC 392
           +I+   I I+K   + +P  + C + YCD C
Sbjct: 388 IIQTFSIEISKTKKVHIPLLLECGHTYCDSC 418


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,270,615
Number of Sequences: 59808
Number of extensions: 345923
Number of successful extensions: 951
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)