Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0650
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical pr...    38   0.009
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    30   1.4  
L17337-5|ABM74562.1|  306|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z68014-13|CAA92028.2|  582|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z68014-12|CAJ30233.1|  272|Caenorhabditis elegans Hypothetical p...    28   7.4  
AY887916-1|AAX34428.1|  582|Caenorhabditis elegans anion transpo...    28   7.4  
AY887915-1|AAX34427.1|  272|Caenorhabditis elegans anion transpo...    28   7.4  
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    27   9.8  

>Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical
           protein C50H2.6 protein.
          Length = 205

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 32  PIPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLV 142
           P+P+T CSA  I++  V +C   ST  H+K  L+K V
Sbjct: 96  PLPATFCSAASIDNNAVKSCKNKSTTLHAKILLSKEV 132


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = -1

Query: 684 CPLLSTN*C------CYTLQL*IN-KCLNIKGRPDRYSREERFLKSVFCPEHTCQC 538
           CP  ++N C      C+T Q+ +  +C N     DR  R E+ L    C  + CQC
Sbjct: 111 CPNTNSNTCSTTGTPCFTGQISVGGQCFNSVNIGDRCQRSEQCLGGSQCQNNLCQC 166


>L17337-5|ABM74562.1|  306|Caenorhabditis elegans Hypothetical
           protein ZK686.6 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 163 YGARRRWSRYRFGSAPRCDIRMLPRSFHSQ 252
           Y  R R SR +  S+P+C I  LP+ F  Q
Sbjct: 7   YEKRERSSRIQKCSSPQCCINRLPKKFQDQ 36


>Z68014-13|CAA92028.2|  582|Caenorhabditis elegans Hypothetical
           protein W04G3.6d protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 588 LSNIDPVFPLYSNIY*SIIVMCSSTSLLTVVGTFQMI 698
           L  + PV+ LY++++ S+I M   TS    +G F ++
Sbjct: 52  LVGLKPVYGLYTSLFPSLIYMFFGTSRHVALGVFAVV 88


>Z68014-12|CAJ30233.1|  272|Caenorhabditis elegans Hypothetical
           protein W04G3.6c protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 588 LSNIDPVFPLYSNIY*SIIVMCSSTSLLTVVGTFQMI 698
           L  + PV+ LY++++ S+I M   TS    +G F ++
Sbjct: 52  LVGLKPVYGLYTSLFPSLIYMFFGTSRHVALGVFAVV 88


>AY887916-1|AAX34428.1|  582|Caenorhabditis elegans anion
           transporter SULP-7d protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 588 LSNIDPVFPLYSNIY*SIIVMCSSTSLLTVVGTFQMI 698
           L  + PV+ LY++++ S+I M   TS    +G F ++
Sbjct: 52  LVGLKPVYGLYTSLFPSLIYMFFGTSRHVALGVFAVV 88


>AY887915-1|AAX34427.1|  272|Caenorhabditis elegans anion
           transporter SULP-7c protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 588 LSNIDPVFPLYSNIY*SIIVMCSSTSLLTVVGTFQMI 698
           L  + PV+ LY++++ S+I M   TS    +G F ++
Sbjct: 52  LVGLKPVYGLYTSLFPSLIYMFFGTSRHVALGVFAVV 88


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 29  LPIPSTCCSAQEINDGVVAACTENSTNFHSKGCL 130
           LP+ S C   Q+ +D  +  C+E    +H + CL
Sbjct: 90  LPVCSFCKEDQKADDEPLKECSECKAKYHIRKCL 123


>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 1 protein.
          Length = 1383

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 564  RLILETFPLSNIDPVFPLYSNIY*SIIVMCSSTSLLTVVGTFQMIC 701
            R I +T  +     +FP Y   Y +I+ + ++   +TVVG F +IC
Sbjct: 1102 RSIDDTAHVFAYSKIFPFYEQ-YSTIMPILTTQLFITVVGVFGIIC 1146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,572,935
Number of Sequences: 27780
Number of extensions: 270359
Number of successful extensions: 760
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)