Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0650
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.53 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +2

Query: 32  PIPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLVVHMKDXXXXXXXXXXXXXXXXXX 211
           PIP++CC++ E N       T + +N ++ GC+  L   +K                   
Sbjct: 158 PIPASCCNSPENN-------TCSISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELI 210

Query: 212 XXXFACCLARSIRS 253
               A CLA SI++
Sbjct: 211 GIICALCLANSIKN 224


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 220 YHTEELNQSDTDSNAGEHHTNVLHVNNQF 134
           +H++ L+ SD D +  EH   +L + + F
Sbjct: 496 FHSQVLSMSDYDISNIEHEALLLVITSTF 524


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 197 KRYRLQRRRAPYQCPSCEQ 141
           + YR      PYQC  C +
Sbjct: 109 RHYRTHTGEKPYQCEYCSK 127



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 188 RLQRRRAPYQCPSCEQ 141
           R+  +  PY+C  CE+
Sbjct: 140 RIHTKERPYKCDVCER 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,368
Number of Sequences: 438
Number of extensions: 3532
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)