Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0649
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 116 1e-27
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 67 1e-12
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 64 1e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 62 5e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 39 4e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 36 0.004
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 34 0.008
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 31 0.058
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.23
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 0.94
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 3.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 3.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 5.0
SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|... 25 5.0
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 6.7
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 6.7
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 25 6.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 6.7
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 8.8
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 24 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 116 bits (280), Expect = 1e-27
Identities = 51/60 (85%), Positives = 57/60 (95%)
Frame = +1
Query: 85 DEEVAALVVDNGSGMCKAGFAGEDAPRAGFPSIVGRPRHQGVMVGMGQKDSYVGDEATAK 264
+EE+AALV+DNGSGMCKAGFAG+DAPRA FPSIVGRPRH G+MVGMGQKDSYVGDEA +K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 116 bits (279), Expect = 2e-27
Identities = 51/59 (86%), Positives = 53/59 (89%)
Frame = +3
Query: 258 SQRGILTLKYPIEHGIVTNWGDMEKIWHHTFYNELRVAPEEQTVLLTEAPLNPKANRXK 434
S+RGILTLKYPIEHGIV NW DMEKIWHHTFYNELRVAPEE LLTEAPLNPK+NR K
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREK 118
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 67.3 bits (157), Expect = 1e-12
Identities = 25/57 (43%), Positives = 43/57 (75%)
Frame = +3
Query: 264 RGILTLKYPIEHGIVTNWGDMEKIWHHTFYNELRVAPEEQTVLLTEAPLNPKANRXK 434
R +L +KYP+E+GI+ ++ +M ++W +TF+ +L++ P + +LLTE P+NP ANR K
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREK 118
Score = 52.8 bits (121), Expect = 2e-08
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +1
Query: 91 EVAALVVDNGSGMCKAGFAGEDAPRAGFPSIVGRP--RHQGVMVGMGQKDSYVGDEATA 261
E A +V+DNG+G K G+A ++ PR FPSIVGRP R + + KD VGDEA A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 63.7 bits (148), Expect = 1e-11
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGEDAPRAGFPSIVGRPRHQGVMVGMGQKDSYVGDEA 255
+ +DNGSG KAGFAG+D P+ FP+ VGR +H+ VM QKD +VG EA
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEA 62
Score = 60.1 bits (139), Expect = 1e-10
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +3
Query: 264 RGILTLKYPIEHGIVTNWGDMEKIWHHTFYN-ELRVAPEEQTVLLTEAPLNPKANRXK 434
RG+L ++ PIE GI+ NW DME+IW + + + +L PEE +LLTE PL N+ K
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEK 123
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 61.7 bits (143), Expect = 5e-11
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = +3
Query: 276 TLKYPIEHGIVTNWGDMEKIWHHTFYNELRVAPEEQTVLLTEAPLNPKANR 428
+L YPI HG + NW ME+ W + + LR PE+ LLTE PLNP NR
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENR 139
Score = 39.9 bits (89), Expect = 2e-04
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGEDAPRAGFPSIVGRPRHQGVMVG--MGQKDSYVGDEAT 258
+++DNG+G K G+AG DAP FP+++ R G G + K SY+ + +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGS 60
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 38.7 bits (86), Expect = 4e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGEDAPRAGFPSIVG 189
+EV+A+V+D GS + GF+GED P+ PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 38.7 bits (86), Expect = 4e-04
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 273 LTLKYPIEHGIVTNWGDMEKIWHHTFYNELRVAPEEQTVLLTEAPLNPKANRXK 434
+ +K I +G V NW +W + +L+ P E +L+TE NP NR K
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK 116
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 35.5 bits (78), Expect = 0.004
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGEDAPRAGFPSIVGRPRHQGVMVGMGQKDSYVGDE 252
EE+ +LV+D GS + G+AGE++P PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDE 56
Score = 31.9 bits (69), Expect = 0.044
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 297 HGIVTNWGDMEKIWHHTFYNELRVAPEEQTVLLTEAPLNPKANR 428
+GI+ +W W +L+V P E +++TE NP++ R
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVR 117
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 34.3 bits (75), Expect = 0.008
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGEDAPRAGFPSIVGRPR 198
LV+DNGS +AG+ GE P+ F ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 31.9 bits (69), Expect = 0.044
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 288 PIEHGIVTNWGDMEKIWHHTFYNELRVAPEEQTVLLTEAPLNP 416
P E +++NW ME++ +TF +L + E + +TE NP
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 31.5 bits (68), Expect = 0.058
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = -3
Query: 368 NTQLIVEGMMPNLLHVTPVSDDSVFDGV-FEGQDTSLAVASSPT*ESFCPIP--TITP*W 198
N ++++ G+M + +TP ++DS++DG+ + +D AV + S P P T+ W
Sbjct: 253 NGEILIPGIMDQVAELTP-TEDSIYDGIDYTMEDLKEAVGAD---ISIYPDPKRTLQHRW 308
Query: 197 RGLPTIEGNPARGASSPAKPALHIP 123
R PT+ + GA S + IP
Sbjct: 309 R-YPTLSLHGIEGAFSGSGAKTVIP 332
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.23
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -3
Query: 269 TSLAVASS--PT*ESFCPI-PTITP*WRGLPTIEGNPARGASSPAKPALHIPEPLSTTNA 99
TS ++S PT S P+ PT+ P P N S P PL+TTN
Sbjct: 391 TSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNC 450
Query: 98 ATSSS 84
TS+S
Sbjct: 451 TTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 0.94
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 247 LLHKSPSVPYRPSRPDGGAFPRSRGTR 167
L+ K+PS PY SRP A S TR
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 226 VPYRPSRPDGGAFPRSRGTRREEHLLLRNRPCTYRSHCLLPT 101
+P + P G A P + GT L N P Y+S+ ++PT
Sbjct: 423 MPSMTNVPAGNA-PAAPGTMYTTPLPTANSPIAYQSYSVMPT 463
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 288 PIEHGIVTNWGDMEKIWHHTFYNELRVAPEEQT 386
PI+ G V +W ++ W H Y+ L P + T
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTT 144
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 148 GEDAPRAGFPSIVGRPRHQGVMVGMGQKDSYVGDE 252
G PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 177
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 259 LWPHLLHKSPSVPYRPSRPDGGAFPRSRGT 170
LWP + + P++PS+ D G GT
Sbjct: 19 LWPLWIDTHVTAPFKPSKNDPGVLIDKYGT 48
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAG 150
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 371 GNTQLIVEGMMPNLLHVTPVSDDSVF 294
G T G N ++VTP DD +F
Sbjct: 535 GTTNSDCSGFAENNIYVTPYMDDQIF 560
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 115 NGSGMCKAGFAGEDAPRAGFPSIV 186
N G+ ++GF E+ R+ FPS V
Sbjct: 404 NACGVTRSGFEAENPFRSDFPSTV 427
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 320 TPVSDDSVFDGVFEGQDTSLAVASS 246
TPV+ S+F E DTS+ +S+
Sbjct: 484 TPVTSSSIFSTATEATDTSVQTSSA 508
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 24.2 bits (50), Expect = 8.8
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = -1
Query: 277 VRIPLWLWPHLLHKSPSVPYRPSR 206
+R P+WLWP + + ++P++ +
Sbjct: 35 LRCPIWLWP--TYDAQTIPWKKKK 56
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 135 LAHTGAIVYYQRGNFFVAHLELVF 64
L TGAIV Y G FF + L+F
Sbjct: 56 LFRTGAIVAYILGMFFTSSFMLLF 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,788
Number of Sequences: 5004
Number of extensions: 39228
Number of successful extensions: 119
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -