Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0649
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.64 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   2.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 213 HHALMAGPSHDRGEPGARSIFSCETGLAHT 124
           HH+  A P H    P A S +     + HT
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPAAIQIGHT 462


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 285 YPIEHGIVTNWGDMEKIWHHTFYNE 359
           YP+E G +TN G M +     F  E
Sbjct: 34  YPLERGELTNSGKMREYQLGQFLRE 58


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 285 YPIEHGIVTNWGDMEKIWHHTFYNE 359
           YP+E G +TN G M +     F  E
Sbjct: 49  YPLERGELTNSGKMREYQLGQFLRE 73


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 254 PQPKRYPDPQIPHR 295
           PQP  +  PQ P R
Sbjct: 23  PQPSPHQSPQAPQR 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,505
Number of Sequences: 438
Number of extensions: 3075
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)