Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0647
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   1.9  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    27   2.5  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   4.4  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
 Frame = -1

Query: 376 VLNSENHSVTPLYENEEKYLISRLNT-----QII*NVPTTVNKLVLYTLQL*INKCLNIK 212
           +LNS +  + PL+ +  ++L  RLN+     + I ++   V++ VLY L++   KC +++
Sbjct: 502 ILNSRSTHLPPLFASLMQHLSCRLNSLNNLVRYIRSMSLDVDRQVLYKLRVMGEKCNSVR 561


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 415 YFPSFKSKNHLTDT-RILATHENSRVRSFFDSSL 513
           Y P  K+  HL+   R L+ HE++ + SFFD+ L
Sbjct: 284 YCPKDKTLVHLSPPERELSVHEDAFIGSFFDNQL 317


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 542 RLKSFECKLC*NKKVSPLCLQFRELFC 622
           +L+ FEC +C N    P+ L    +FC
Sbjct: 354 QLRDFECAICSNVAYKPVRLGCSHVFC 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,215
Number of Sequences: 5004
Number of extensions: 46073
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)