Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0647
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    28   7.1  

>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 2   LFEYFEMSFFLVYFNIHVLLLRDKR 76
           LF YF  S F++YF +  L++RD +
Sbjct: 61  LFSYFLFSTFILYFIVLYLIVRDSQ 85


>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical protein
            F33C8.1b protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 659  VLRRNIEIYRGLYRTVPEIEDRAARPFYFSK 567
            +++  IE YR   R + EIE  A+RPF  +K
Sbjct: 1161 MIKVRIEAYRRNQRRIDEIEHMASRPFASTK 1191


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical protein
            F33C8.1a protein.
          Length = 1271

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 659  VLRRNIEIYRGLYRTVPEIEDRAARPFYFSK 567
            +++  IE YR   R + EIE  A+RPF  +K
Sbjct: 1198 MIKVRIEAYRRNQRRIDEIEHMASRPFASTK 1228


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin protein.
          Length = 1329

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 659  VLRRNIEIYRGLYRTVPEIEDRAARPFYFSK 567
            +++  IE YR   R + EIE  A+RPF  +K
Sbjct: 1198 MIKVRIEAYRRNQRRIDEIEHMASRPFASTK 1228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,258,703
Number of Sequences: 27780
Number of extensions: 253862
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)