Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0646
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.13
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 30 0.29
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 28 0.90
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 0.90
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 28 1.2
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 26 3.6
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 6.3
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 25 8.4
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 25 8.4
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 25 8.4
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 8.4
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 25 8.4
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 8.4
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.1 bits (67), Expect = 0.13
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 52 PRTHS-SKHASSIPSPFSTSPRKLQEMAMPSTEGHDVTNISGISMKQYEEQLNGLRKENF 228
P T++ SK S I P S + E + S +++K+ ++ LRKE F
Sbjct: 207 PTTNALSKKISDILIPASAMKDLKDRKNALAKEFEESQPGSSLTLKEQANVIDNLRKEVF 266
Query: 229 HLKLRIYFL 255
LKL+ YFL
Sbjct: 267 GLKLKCYFL 275
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 29.9 bits (64), Expect = 0.29
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +3
Query: 234 EIEDLFFEEKLGN--GSPPAVQGLLEHNVRLQVEVEELRRQLTDKQE-LLAAAAEAIDVL 404
E+E + +E N GSP + + N RLQ +E+ R L +QE L+ +A +
Sbjct: 115 EVEQIETQEGGDNAKGSPSSENKDSDRNSRLQQLIEKKRNALKKEQEDLIQNSATSHSKS 174
Query: 405 EQQGSVSTDSMEVSMNNSASMKXAAD 482
+ S S D +++ + S K +D
Sbjct: 175 DNLDSESADDSDLADESELSKKYTSD 200
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 28.3 bits (60), Expect = 0.90
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 318 LQVEVEELRRQLTDKQELLAAAAE---AIDVLEQQGSVSTDSMEVSMNN 455
+Q E+EE RRQL ++E L A E A SVST VS N
Sbjct: 360 VQKEIEEKRRQLLAREEALRALEEKLAASTAAMANASVSTLPSSVSSTN 408
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 28.3 bits (60), Expect = 0.90
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = -2
Query: 528 HVSSTASAALLSRHVDRRXFSSKRYCSWTPPYCRSRLNPAALERRWPQLRPRA 370
H S +AAL++ V + F KR WT Y R LN RW R RA
Sbjct: 703 HTSDVQTAALIAAFVVPKKFLDKRAEDWTESY-RELLN------RWKLYRERA 748
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 393 IDVLEQQGSVSTDSMEVSMNNSASMKXAADPHDETTEQRTPSTI 524
+D+LE ST + ++ + ++DP D T T STI
Sbjct: 285 LDMLESNSKPSTPVPTEELTSTTLLNDSSDPSDNFTPSNTESTI 328
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 11 VDL*QSFEEKWPHYLERTVLNMLRVYHHRL 100
+D Q F ++ HY + + NM+ +HHRL
Sbjct: 141 IDSWQYFWHRYLHY-NKKLYNMIHAHHHRL 169
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 175 ISMKQYEEQLNGLRKENFHLKLRIYFLKKNSATDPRPRYKV 297
++ KQ + + NFHLK ++K++ +P+Y V
Sbjct: 535 LTQKQVIPFFSSMELANFHLKQMFGYVKQSKTKAGQPQYTV 575
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 324 VEVEELRRQLTDKQELLAAAAEAIDVLEQQGSVSTDSMEVSMNNSASMKXAADPH 488
V VE++ + +++E +AAA V++ QGSV + + + S++ DPH
Sbjct: 419 VIVEQVEDENEEEEEAIAAAENNNGVIQVQGSVVSFLERLDDEFTRSLQ-MIDPH 472
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 327 EVEELRRQLTDKQELLAAAAEAIDVLEQQGSVSTDSMEVSMNNSASMKXAADPHDETTEQ 506
E+ E++ ++ + + ID+LEQ+ S+E N+ + D ++ EQ
Sbjct: 150 EMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSMEQ 209
Query: 507 RTPS 518
R S
Sbjct: 210 RLDS 213
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 327 EVEELRRQLTDKQELLAAAAEAIDVLEQQGSVSTDSMEVSMNNSASMKXAADPHDETTEQ 506
E+ E++ ++ + + ID+LEQ+ S+E N+ + D ++ EQ
Sbjct: 150 EMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSMEQ 209
Query: 507 RTPS 518
R S
Sbjct: 210 RLDS 213
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.0 bits (52), Expect = 8.4
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 234 EIEDLFFEEKLGNGSPPAVQ-GLLEHNVRLQVEVEEL----RRQLTDKQELLAAAAEAID 398
EI +L +E K S V+ L+E N L VE L R DK+E+L E +
Sbjct: 832 EIIELKYELKKQQNSKSEVERDLVETNNSLTA-VENLLTTERAIALDKEEILRRTQERLA 890
Query: 399 VLEQQGSVSTDSMEVSMNNSASMK 470
+E S + E SAS+K
Sbjct: 891 NIEDSFSETKQQNENLQRESASLK 914
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 258 EKLGNGSPPAVQGLLEHNVRLQVEVEELRRQLTDKQELLAAAAEAIDVLEQQGSVSTDSM 437
EK+ SPP VQG+ L L + + ++L ++ D LEQ+ +++ +
Sbjct: 100 EKMDMESPP-VQGIRLQMANLLASAGALHKAWSMYWDILERTSKLPDFLEQRVLIASKLI 158
Query: 438 EVS 446
E+S
Sbjct: 159 ELS 161
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 55 RTHSSKHASSIPSPFSTSPRKLQEMAMPSTEGHDVTNISGISMKQYEEQLNGLRKE 222
R +S+ S+IP+ S S + + PS+ T ++GI M Q E L +E
Sbjct: 336 RKYSASSYSAIPNAMSVSNQAFDVESPPSSY---ATPLTGIRMPQPESDLYSYPRE 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,803
Number of Sequences: 5004
Number of extensions: 43056
Number of successful extensions: 162
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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