Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0645
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    27   3.7  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   4.9  

>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 215 DAGARYSHSKRKRRNIDYTLLKRWT*ILTMYSERAYGRESDVP 343
           +  A YS S+RK+ + +    +RWT +  +  E A   +S  P
Sbjct: 486 EVDAEYSESRRKKEDEEIIREERWTILENIAKENAMKLKSQNP 528


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 275 LKRWT*ILTMYSERAYGRESDVPVGLL 355
           L+R+   LT YSE+   +ES+  VGLL
Sbjct: 823 LQRYLQQLTQYSEKFLNKESENTVGLL 849


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,030
Number of Sequences: 5004
Number of extensions: 51592
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)