Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0645
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30150.1 68415.m03669 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.9  
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont...    27   9.9  

>At2g30150.1 68415.m03669 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 440

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 611 IYMSVGLPTTVAGALIMRTLVGVRNNNVNFKWPASG 504
           +Y+S G   +V+ A +   +VGVR   V F W A G
Sbjct: 257 LYISQGSFLSVSEAQMEEIVVGVREAGVKFFWVARG 292


>At1g74190.1 68414.m08592 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 965

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 335 RSRGRMPARYT*LVSMSIFLTVYNLCSG 252
           R +GR+P++ T L S+S+F   +N  SG
Sbjct: 838 RLQGRIPSQLTELTSLSVFKVSHNNLSG 865


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,306,896
Number of Sequences: 28952
Number of extensions: 248764
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)