Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0642
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   4.5  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   4.5  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    26   5.9  

>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 152 WPARAEVTTSXSRSEHMNVRDSTRATSAGSVRSNQQLSYLGSRLRVVCC 6
           W A+ + T S       ++    RATSA S  ++ +L  LG + + + C
Sbjct: 437 WKAQHDNTLSSVDIPRASIAHVVRATSAMSQSASARLKNLGLQQKAILC 485


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 11  RPPSNDCPNTITVGWTGQ-TRQTLPGLNPARSYAPIGRXTWSPRLAPARSPPWGTTSPPR 187
           +PPS      +      Q TR+ +  L+PA S A IG  T+     P+ +  +   + P 
Sbjct: 183 KPPSQPAIPIVPSEMAAQVTRENISSLDPAISAASIGNVTFGQPNIPSTTTDFAGLAAPN 242

Query: 188 I 190
           +
Sbjct: 243 M 243


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 49  WLDRTDPADVARVESRT 99
           WL  TDP+ V+RVE  T
Sbjct: 419 WLQNTDPSTVSRVEVST 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,751
Number of Sequences: 5004
Number of extensions: 59371
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)