Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0642
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 33 0.28
04_04_0151 + 23134467-23134627,23134657-23134803,23135413-231355... 33 0.28
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 31 0.66
11_01_0737 + 6211149-6211466,6212022-6212183,6212290-6213101,621... 30 1.5
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 30 2.0
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 29 2.6
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 29 2.6
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 29 2.6
04_04_0462 + 25393733-25394347 29 3.5
01_06_0640 + 30779457-30779623,30779707-30779828,30779959-307800... 29 3.5
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 29 4.6
10_08_0303 - 16638379-16640199 29 4.6
06_03_1062 - 27293119-27293313,27293390-27293548,27293877-272941... 29 4.6
01_06_0751 + 31690411-31690443,31692900-31694240 29 4.6
09_01_0013 - 355103-355435 28 6.1
05_04_0053 + 17520202-17520984 28 6.1
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 28 8.1
02_05_0464 - 29256887-29257765,29258455-29258538 28 8.1
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 134 PRLAPARSPPWGTTSPPRITRRPCPTD 214
P++ P SPP T SPP IT P P D
Sbjct: 616 PKITPYPSPPEVTPSPPEITPYPSPPD 642
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 134 PRLAPARSPPWGTTSPPRITRRPCPTD 214
P + P SPP T SPP IT P P +
Sbjct: 584 PEITPYPSPPEITPSPPEITPYPSPPE 610
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 134 PRLAPARSPPWGTTSPPRITRRPCPTD 214
P +AP SPP SPP IT P P +
Sbjct: 444 PEIAPYPSPPEIVPSPPEITPYPSPPE 470
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 134 PRLAPARSPPWGTTSPPRITRRPCPTD 214
P + P SPP SPP+IT P P +
Sbjct: 600 PEITPYPSPPEVVPSPPKITPYPSPPE 626
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 134 PRLAPARSPPWGTTSPPRITRRPCPTD 214
P + P SPP T PP IT P P +
Sbjct: 568 PEITPYPSPPEVTPGPPEITPYPSPPE 594
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 134 PRLAPARSPPWGTTSPPRITRRPCPTD 214
P + P SPP SPP IT P P +
Sbjct: 460 PEITPYPSPPEIVPSPPEITPYPSPPE 486
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 134 PRLAPARSPPWGTTSPPRITRRPCPTD 214
P + P SPP SPP IT P P +
Sbjct: 508 PEITPYPSPPEIVPSPPEITPYPSPPE 534
>04_04_0151 +
23134467-23134627,23134657-23134803,23135413-23135512,
23135554-23135638,23135767-23136419
Length = 381
Score = 32.7 bits (71), Expect = 0.28
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Frame = +2
Query: 11 RPPSNDCPNTIT----VGWTGQTRQTLPGLNPARSYAPIGRXTWSPRLAPARSPPWGTTS 178
RP S PN IT + T + + G R G PRL+ PP ++S
Sbjct: 206 RPCSTLNPNLITGSRILPRPRSTSELVAGDRVLRRDLVTGGHVHRPRLSRWLRPPRRSSS 265
Query: 179 PP------RITRRPCPTDSLVA*EVAQCT*YLLDGPC 271
P RI RRP PT LVA V+ T +L PC
Sbjct: 266 PVPPLSLRRILRRPRPTPELVAGAVSVTTRRILRRPC 302
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +2
Query: 80 PGLNPARSYAPIGRXTWSPRLAPARSPPWGTTSPPRITRRP 202
P PA S A + T SPR A +PPW T PP I P
Sbjct: 91 PMPTPAASSA-LAPATSSPRPASPPTPPWTTAPPPGIAAPP 130
>11_01_0737 +
6211149-6211466,6212022-6212183,6212290-6213101,
6213188-6213395,6214157-6214364,6214752-6215206,
6215585-6216011,6216391-6216471,6216571-6216761,
6216855-6216998
Length = 1001
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 103 ICSDREXDVVTSARAGQKSALGNYISPPDYEKAVSDRFPGCMRGRTMYVIPSRW 264
+C+ R D + +G+K L ++ D+EKA P MR ++ + RW
Sbjct: 678 LCTSRSNDTENNGSSGKKDDLLLLVTTEDFEKAKIKVRPSAMREVSLELPKIRW 731
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +2
Query: 131 SPRLAPARSPPWGTTSPPRITRRPCPTDSLVA*EVAQCT 247
SPR + + +PP SP RI RRP PT LVA V+ T
Sbjct: 302 SPRRSSSPAPP---PSPRRILRRPRPTLELVAGAVSITT 337
>12_01_0063 -
535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 162 PGELHLPPGLREGRVRQIPWLHERSHNVRDTFSMGPVGSP 281
PGE +PP G R W S N F PV P
Sbjct: 768 PGETSVPPSSNFGMARSSSWFDMNSGNFSVAFRTPPVSPP 807
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 162 PGELHLPPGLREGRVRQIPWLHERSHNVRDTFSMGPVGSP 281
PGE +PP G R W S N F PV P
Sbjct: 755 PGETSVPPSSNFGMARSSSWFDMNSGNFSMAFRTPPVSPP 794
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +2
Query: 5 SSRPPSNDCPNTITVGWTGQTRQTLPGLNPARSYAPIGRXTWSPRLAPARSPPWGTTSPP 184
SS S+ CP T +G T +P + A S+AP P P PP G +P
Sbjct: 454 SSTYSSSSCPPEPTSSTSGSTSSWVPPRDNASSWAPPPPRGNPPSWVPLPPPP-GGNAPS 512
Query: 185 RITRRPCP 208
+ P P
Sbjct: 513 WVPPPPQP 520
>04_04_0462 + 25393733-25394347
Length = 204
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 171 VPQGGLLAGASRGDHVXLPIGAYERAGFNPGNVCRVCPVQP 49
VP GG G G H + +Y A G+V RVC V+P
Sbjct: 96 VPPGGKAGGVCLGGHSVAAVVSYGGAFLGEGSVGRVC-VEP 135
>01_06_0640 +
30779457-30779623,30779707-30779828,30779959-30780014,
30780147-30780254
Length = 150
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 59 GQTRQTLPGLNPARSYAPIGRXTWSPRLAPARSPPWGTTSPPRITRR 199
G R+ L GL A S + +P A ARSP S PR TRR
Sbjct: 6 GGARRALAGLRSASSSRAFSQP--APAAAAARSPELAAFSLPRSTRR 50
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +2
Query: 5 SSRPPSNDCPNTITVGWTGQTRQTLPGLNPARS--YAPIGRXTWSPRL-APARSPPWGTT 175
SS P P + G + + P PA S Y P G P AP++ PP+G
Sbjct: 757 SSHAPHAQGPYGVPPGGDSRPGYSQPEQRPAYSQPYPPYGAPPQQPPYGAPSQQPPYGAP 816
Query: 176 SPPRITRRP 202
P + P
Sbjct: 817 HPGHYQQPP 825
>10_08_0303 - 16638379-16640199
Length = 606
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 335 ASHD*NWSEGSRYSTSRRAVCSLSSRSRIRWHS--GLALRPSEHRRTPQAG*QRDSK 499
+SH + G+ Y++SRR C+ R++ R ++ + + S+ R P QR K
Sbjct: 531 SSHGLQRASGTTYNSSRRKQCARKERAKERLYATPAMGMMVSKSRDEPPPAAQRQQK 587
>06_03_1062 -
27293119-27293313,27293390-27293548,27293877-27294194,
27294535-27294795,27294901-27294978,27295707-27295901
Length = 401
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 389 LVLT*NI*NLRSNSSHDSHRKNHVRRIRDFYTNLRERRSHRAH--REGITYIVRP 231
++L N+ + +D N + + D Y N +HRAH EG+T +RP
Sbjct: 115 VLLLENVRFYKEEEKNDPEFANKLASVADLYVNDAFGTAHRAHASTEGVTKYLRP 169
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 414 VGSGGTPGWPCDPQNIVVLHKPANN 488
+ S G PGWP Q + H P N+
Sbjct: 326 ISSAGVPGWPDHSQRMQAWHAPENS 350
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 563 VGSGGTPGWPCDPQNIVVLHKPANN 637
+ S G PGWP Q + H P N+
Sbjct: 326 ISSAGVPGWPDHSQRMQAWHAPENS 350
>09_01_0013 - 355103-355435
Length = 110
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 95 ARSYAPIGRXTWSPRLAPARSPPW 166
AR A GR W PR P R P W
Sbjct: 28 ARGGAAGGRRAWRPRWRPQRRPRW 51
>05_04_0053 + 17520202-17520984
Length = 260
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2
Query: 688 LAQQTVAAISTAVAYYLVVSRLVEYDDVLRVAGPARS 578
++ T AA++T V+Y +V R+V V V+GP RS
Sbjct: 183 VSPDTAAALATDVSYGVVALRVVVLGRVRFVSGPFRS 219
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 143 APARSPPWGTTSPPRITRRPCPTDS 217
APA +PP +P R+ RRP T S
Sbjct: 13 APAAAPPSAVRTPRRLRRRPLKTAS 37
>02_05_0464 - 29256887-29257765,29258455-29258538
Length = 320
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -3
Query: 210 VGHGLLVIRGGDVVPQGGLLA---GASRGDHVXLPIGA 106
+G G++ I GG V L A A GDH+ LP GA
Sbjct: 220 MGAGMMGIGGGGVAEYHALSALRFAAGLGDHLALPFGA 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,326,670
Number of Sequences: 37544
Number of extensions: 490235
Number of successful extensions: 1836
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1833
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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