Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0642
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 101 4e-22
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 98 7e-21
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 96 2e-20
SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74) 31 0.89
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) 30 2.0
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032) 30 2.0
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 29 2.7
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0) 29 3.6
SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51) 28 6.2
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 28 6.2
SB_32053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39) 28 8.3
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 101 bits (243), Expect = 4e-22
Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 5/92 (5%)
Frame = +3
Query: 255 FSMGPVGSPLSKIGVEITDSPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTP 434
FSMGPVGSP+SKIG+E+TDS YVV MR+MTR+G+ VL L D FV CLH+VG
Sbjct: 6 FSMGPVGSPISKIGIELTDSEYVVCCMRIMTRMGSHVLKAL-GDGDFVRCLHSVGGPLHD 64
Query: 435 G-----WPCDPQNIVVLHKPANNEIVSYGARF 515
G WPCDP+ ++ H P EI SYG+ +
Sbjct: 65 GKNNVPWPCDPERTLITHFPETREIKSYGSGY 96
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +2
Query: 494 SKLRSKVLDILRQDEQFVHCLHAVGSGGTPG-----WPCDPQNIVVLHKPANNEI 643
+++ S VL L D FV CLH+VG G WPCDP+ ++ H P EI
Sbjct: 36 TRMGSHVLKALG-DGDFVRCLHSVGGPLHDGKNNVPWPCDPERTLITHFPETREI 89
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 97.9 bits (233), Expect = 7e-21
Identities = 47/93 (50%), Positives = 64/93 (68%), Gaps = 5/93 (5%)
Frame = +3
Query: 252 TFSMGPVGSPLSKIGVEITDSPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGT 431
T +MGPVGSP++KIG+++TDS YVV MR+MTR+G+ VL L Q + FV CLH+VG
Sbjct: 319 TENMGPVGSPIAKIGIQLTDSEYVVCCMRIMTRMGSHVLKALDQGD-FVKCLHSVGKPLK 377
Query: 432 PG-----WPCDPQNIVVLHKPANNEIVSYGARF 515
G WPCDP ++ H PA+N I S+G+ +
Sbjct: 378 EGEKDVLWPCDPDRTIITHFPADNYIKSFGSGY 410
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 1 LQQQTTLKRLPKYDNCWLDRTDPADVARVESRTFICSDREXDVVTSARAGQKSA---LGN 171
L ++ T +L K +N ++ RTDP DVARVES+TFIC++ E D V + G+ LG
Sbjct: 192 LVKKGTCFKLTKRENSYVVRTDPGDVARVESKTFICTENERDAVPDFKKGKDGVVGQLGR 251
Query: 172 YISPPDYEKAVSDRFPGCMR 231
++S +A+ +RFPGCM+
Sbjct: 252 WLSVEKANQALGERFPGCMK 271
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +2
Query: 494 SKLRSKVLDILRQDEQFVHCLHAVGSGGTPG-----WPCDPQNIVVLHKPANNEI 643
+++ S VL L Q + FV CLH+VG G WPCDP ++ H PA+N I
Sbjct: 350 TRMGSHVLKALDQGD-FVKCLHSVGKPLKEGEKDVLWPCDPDRTIITHFPADNYI 403
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 96.3 bits (229), Expect = 2e-20
Identities = 48/92 (52%), Positives = 62/92 (67%), Gaps = 5/92 (5%)
Frame = +3
Query: 255 FSMGPVGSPLSKIGVEITDSPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTP 434
FSMGPVGSP+SKIG+++TDS YVV MR+MTR+G+ VL L D FV +H+VG
Sbjct: 136 FSMGPVGSPISKIGIQLTDSEYVVCCMRIMTRMGSHVLKAL-GDGDFVRGVHSVGFPLKE 194
Query: 435 G-----WPCDPQNIVVLHKPANNEIVSYGARF 515
G WPCDP+ ++ H PA EI SYG+ +
Sbjct: 195 GVKEVPWPCDPERTLITHFPATREIKSYGSGY 226
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Frame = +1
Query: 28 LPKYDNCWLDRTDPADVARVESRTFICSDREXDVVTSARAGQKSALGNYISPPD-YEKAV 204
L K++NC+ TDP DVARVESRTFIC+ + D V + G+ L ++S + ++K
Sbjct: 60 LEKHENCYAVFTDPQDVARVESRTFICTKCKDDAVPHFK-GKVGKLARWMSLEEAHKKLY 118
Query: 205 SDRFPGCMRGRTMYVIP 255
+R+PGCM GRTMYV+P
Sbjct: 119 EERYPGCMTGRTMYVLP 135
Score = 36.3 bits (80), Expect = 0.024
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +2
Query: 494 SKLRSKVLDILRQDEQFVHCLHAVGSGGTPG-----WPCDPQNIVVLHKPANNEI 643
+++ S VL L D FV +H+VG G WPCDP+ ++ H PA EI
Sbjct: 166 TRMGSHVLKALG-DGDFVRGVHSVGFPLKEGVKEVPWPCDPERTLITHFPATREI 219
>SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)
Length = 668
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 186 RGGDVVPQGGLLAGASRGDHVXLPIG 109
R GDV+P GG + RGD V + IG
Sbjct: 526 RSGDVIPLGGTAGDSERGDEVPVLIG 551
>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
Length = 619
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 189 LREGRVRQIPWLHERSHNVRDTFSM 263
L GRV ++PW ++SH+ DT S+
Sbjct: 212 LSRGRVPEVPWYEDQSHHSSDTGSI 236
>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
Length = 227
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 105 YERAGFNPGNVCRVCPVQPTVIVFGQ 28
Y ++ FNP N CRVC + V GQ
Sbjct: 32 YAKSLFNPNNFCRVCNANTSKRVLGQ 57
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 146 PARSPPWGTTSPPRITRRPCPTDSLVA--*EVAQC 244
P R P WGTT+ P T C S+V E+++C
Sbjct: 977 PTREPKWGTTAYPTSTFINCSASSVVTFKWEISKC 1011
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 365 NLRSNSSHDSHRKNHVRRIRDFYTNLRERRSHRA 264
N S+++ +SH +H + I+ F +R+ SHRA
Sbjct: 53 NAPSHATQNSHYSSHEKYIKFFDRKIRDNNSHRA 86
>SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)
Length = 1031
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +3
Query: 282 LSKIGVEITDSPYVVFSMRV-MTRIGA-KVLDILRQDEQFVHCLHAVGSGGTP 434
LSK+GV++ DS + V + + A ++LDILR++ + L ++G+ G P
Sbjct: 259 LSKVGVDVGDSALFINGRMVDIDDLNAFELLDILREEWTVLDKLASLGAKGEP 311
>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
Length = 287
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 99 RAGFNPGNVCRVCPVQPTVIVFGQ 28
++ FNP N CR+C + V GQ
Sbjct: 121 KSSFNPNNFCRLCNANTSNCVLGQ 144
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 222 TRESVGHGLLVIRGGDVVPQGGLLAGASRGDHV 124
T GHG + + GG V GG AG G HV
Sbjct: 319 TMNMTGHGEVNVNGGSVTGSGGGGAGGRIGIHV 351
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +1
Query: 52 LDRTDPADVARVESRTF-ICSDREXDVVTS-ARAGQKSAL-GNYISPPDYEKAVSDRFPG 222
L +TD A +T I + + D T+ G ++AL G+Y+ P + R PG
Sbjct: 255 LHQTDGAHCTDFTKQTTRIVNTKHTDWATTWVYQGLQAALQGDYLGVPADPSFTTGRLPG 314
Query: 223 CMRGRTMYVIPSRW 264
C RG + + W
Sbjct: 315 CTRGSKLRYRATTW 328
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 151 QKSALGNYISPPDYEKAVSDRFPGCMRGRTMYVIPSRW 264
Q + G+Y+ P + R PGC RG + + W
Sbjct: 334 QAALQGDYLGVPGDPSCATGRLPGCTRGSKLRYRATTW 371
>SB_32053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 14 PPSNDCPNTITVGWTGQTRQTLPGLNPARSYAPIGRXTWSPRLAPARSPPWGTTSPPR 187
PPS P+ +G + + + P ++ A+S + IG+ S PA P G +PPR
Sbjct: 314 PPSTGKPSPPPLGESPASNTSPPLISAAKSESSIGKLQKSLAFNPAMLQPGG--APPR 369
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 80 PGLNPARSYAPIGRXTWSPRLAPARSPPWGTTSPPRITRRP 202
P P + P R P P+R+ P TT PPR T P
Sbjct: 1105 PRTTPEPTTEP-SRTKPEPTTEPSRTKPEPTTEPPRTTSEP 1144
>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 128 WSPRLAPARSPPWGTTSPPRITRRPCPTDS 217
W PRL P P +P I R C T S
Sbjct: 146 WEPRLYPLAQPDLNYAAPEFILSRTCDTSS 175
>SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 231 RSHNVRDTFSMGPVGSPLSKIGVEI 305
R N+ FS+GPVGS L IG ++
Sbjct: 84 RMRNMLIEFSLGPVGSTLGAIGPQV 108
>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
Length = 1024
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 353 NSSHDSHRKNHVRRIRDFYTNLRERRSHRAHREGITYIVRP 231
+ +D+HRK+ I+ T + E+ + H EG+ +P
Sbjct: 201 SGDNDNHRKSDSSAIKSSQTEIVEKMADHLHLEGVNLSKKP 241
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,456,638
Number of Sequences: 59808
Number of extensions: 522187
Number of successful extensions: 1609
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -