Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0642
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    31   0.96 
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    31   0.96 
At5g24316.1 68418.m02864 proline-rich family protein contains pr...    30   1.3  
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot...    29   2.2  
At3g07530.1 68416.m00899 expressed protein ; expression supporte...    29   2.9  
At1g31860.1 68414.m03916 histidine biosynthesis bifunctional pro...    29   3.9  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    28   5.1  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    28   6.8  
At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident...    28   6.8  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    27   8.9  

>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 176

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +2

Query: 41  ITVGWTGQTRQTLPGLNPARSYAPIGRXTWSPRLAPARSPPWGTTSPPRITRRPCPTD 214
           +  G TGQ   + P   PA           +P   P  +PP  TTSPP +T  P P +
Sbjct: 14  LIAGVTGQAPTSPPTATPAPPTPTTPPPAATP--PPVSAPPPVTTSPPPVTTAPPPAN 69


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 191

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +2

Query: 41  ITVGWTGQTRQTLPGLNPARSYAPIGRXTWSPRLAPARSPPWGTTSPPRITRRPCPTD 214
           +  G TGQ   + P   PA           +P   P  +PP  TTSPP +T  P P +
Sbjct: 14  LIAGVTGQAPTSPPTATPAPPTPTTPPPAATP--PPVSAPPPVTTSPPPVTTAPPPAN 69


>At5g24316.1 68418.m02864 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 125

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 128 WSPRLAPARSPPWGTTSPPRITRRP 202
           WSPR  P R  P+    PP  TRRP
Sbjct: 95  WSPRPIPKRPMPYVPPPPPPPTRRP 119


>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 506

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 688 LAQQTVAAISTAVAYYLVVSRLVEYDDVLRVAGPARSATGSDCVKTMNKLLVL 530
           L ++TVA      +  LV    +E DDVL++A    +A   D + T+ K LV+
Sbjct: 175 LQERTVALAKELASLKLVSDLSLEEDDVLKLALLGNNAKTKDTIDTLVKSLVI 227


>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 620

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +1

Query: 4   QQQTTLKRLPKYDNCWLDRTDPADVARVESRTFICSDREXDVVTSARAGQKSALGNYISP 183
           Q ++ LKRL    +CWL  T P DV ++    +    +    + + ++  K   G Y SP
Sbjct: 132 QCESLLKRLMSQQHCWLFNT-PVDVVKLNIPDYFTIIKHPMDLGTVKS--KLTSGTYSSP 188

Query: 184 PDYEKAVSDRFPGCM 228
            ++   V   F   M
Sbjct: 189 SEFSADVRLTFRNAM 203


>At3g07530.1 68416.m00899 expressed protein ; expression supported
           by MPSS
          Length = 699

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +3

Query: 270 VGSPLSKIGVEITDSPYVVFSMRVMTRIGAKVLDILRQDEQFVH----CLHAVGSGGTPG 437
           + +P+  +G+         F+   MT + AK+  ++ +D   +H    C H   +   PG
Sbjct: 108 ISNPMGLLGLPFLTQNPGFFAKIYMTEVTAKIGQLMMEDIVSMHKEFRCFHGPDNSSFPG 167

Query: 438 W 440
           W
Sbjct: 168 W 168


>At1g31860.1 68414.m03916 histidine biosynthesis bifunctional
           protein (HISIE) identical to histidine biosynthesis
           bifunctional protein hisIE, chloroplast [precursor] SP:
           O82768 from [Arabidopsis thaliana]; identical to cDNA
           phosphoribosyl-ATP pyrophosphohydrolase GI:3461883
          Length = 281

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -1

Query: 608 CSEGRRASPECHRIRLREDNEQTARLDVEYLEPCSVAYYLVVSRLVEYDDVLRVAGPARS 429
           CS+ R  + E    R  EDNE+ +R   E  +    A  L+  R V+ +DVL V     S
Sbjct: 212 CSKIREEADEL--CRTLEDNEEVSRTPSEMADVLYHAMVLLSKRGVKMEDVLEVLRKRFS 269

Query: 428 ATG 420
            +G
Sbjct: 270 QSG 272


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +2

Query: 41  ITVGWTGQTRQTLPGLNPARSYAPIGRXTWSPRL-----APARSPPWGTTSPPRITRRPC 205
           +  G  GQ+  + P  +P    AP    T SP +     APA++P    +SP    + P 
Sbjct: 15  VVAGVGGQSPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPA 74

Query: 206 P 208
           P
Sbjct: 75  P 75


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 80  PGLNPAR--SYAPIGRXTWSPRLAPARSPPWGTTSPPRITRRPCPTDS 217
           P  +PA   S++P    + SP  AP+ SP    +  P   + P P+ S
Sbjct: 237 PSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSS 284


>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
           identical to cyclase-associated protein (cap1)
           GI:3169136 from [Arabidopsis thaliana]
          Length = 476

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +2

Query: 47  VGWTGQTRQT-LPGLNP-ARSYAPIGRXTWS----PRLAPARSPPWGTTSPP 184
           V W    ++  LPGL    +S+ P+G   W+    P  APA+ PP     PP
Sbjct: 191 VEWAKALKELYLPGLREYVKSHYPLG-PVWNASGKPASAPAKGPPGAPAPPP 241


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 92  PARSYAPIGRXTWSPRLAPARSPPWGTTSPPRITRRP 202
           P  S +P    T +P   P+ SPP  T SPP  T  P
Sbjct: 119 PDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSP 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,936,146
Number of Sequences: 28952
Number of extensions: 349073
Number of successful extensions: 1112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)