Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0641
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    27   3.4  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    25   7.8  

>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 475 LNLTGQMFSVNKALSGSSQRILFAERVPRRHRGLTHIMPSAW 600
           L L G + +V++++      +   E+  RR    TH MP  W
Sbjct: 542 LGLFGSLIAVSRSIIPDETLVFAPEKALRRVITFTHYMPGWW 583


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 284 FLNKVGESHRMMMKGKPI 231
           FL+K+GES+ + +KG P+
Sbjct: 155 FLSKIGESNTITVKGMPL 172


>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 171 VPMSIGRNWSADIVRTTSTVDRFPFHHH 254
           + M +G   +AD +  +  + ++PF HH
Sbjct: 329 IDMPVGLLSAADFLTISKIIQKYPFKHH 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,559
Number of Sequences: 5004
Number of extensions: 52902
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)