Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0641
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1466 + 30350112-30350978                                         31   1.1  
07_01_0581 + 4320515-4320782,4320954-4321117,4321352-4321366           29   2.6  
10_06_0104 + 10786613-10788040                                         28   8.0  

>06_03_1466 + 30350112-30350978
          Length = 288

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = -1

Query: 498 KHLASQVEAAVAFAPWSHSARIHVRTRKLWHRTRPLCISPLLRHRRARLGPLATTHGDSE 319
           + ++  +  A +F P S +A  HVR+  L  R+ PL +S L  H  A    L   HGD+ 
Sbjct: 7   RSISFPLSPARSFKPRSAAAACHVRSISLPCRSHPL-LSHLQSHIAAVRSWLLQDHGDAS 65

Query: 318 TGMSLGS 298
              S+ +
Sbjct: 66  ASASVSA 72


>07_01_0581 + 4320515-4320782,4320954-4321117,4321352-4321366
          Length = 148

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 407 CQSLRVRTCMRALCDQGANATAAST*LARCFQSIKRS 517
           C  +R+  C RAL   G+  T+ +T  ARC   I R+
Sbjct: 44  CGDVRIVKCDRALSTTGSATTSPTTNSARCLAPIDRA 80


>10_06_0104 + 10786613-10788040
          Length = 475

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 237 FPFHHHAVRLTNFVKKLSYALSPATYRSRSRRELLLTDPAEPFDVVEVEKYIVGEFGAKA 416
           +P      +L+  +    YAL P+T  S  R ++ + DP E    V + +  VG+F    
Sbjct: 338 WPARQAGTKLSAVIDGDLYALEPST--SSDRGKIKIYDPQEDAWKVAIGQVPVGDFAESE 395

Query: 417 CVF 425
           C +
Sbjct: 396 CPY 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,465,642
Number of Sequences: 37544
Number of extensions: 364007
Number of successful extensions: 887
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)