Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0641
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     28   8.1  

>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 429 VRTRKLWHRTRPLCISPLLRHRRARLGPLATTH 331
           ++ R LW+ T    + PL      +L PLAT+H
Sbjct: 215 IKNRSLWNSTNVSTVDPLWILDDCKLAPLATSH 247


>SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 195 WSADIVRTTSTVDRFPFH-HHAVRLTNFVKKLSYALSPATYRSRSR---RELLLTDPAEP 362
           WS  ++  T  V R+PFH      L   +++  +A+ P T  S+++   R ++  DP E 
Sbjct: 656 WSLGVMLYTMVVGRYPFHDSEPTALFTKIRRGHFAI-PDTVSSKAKCLIRSMMRRDPDER 714

Query: 363 FDVVEV 380
               EV
Sbjct: 715 LMASEV 720


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 629  TVGCRSSFAY--QADGIMWVSPRCLLGTRSANNILWLDPES 513
            T+GC S+       DG  ++  R + GT +ANN ++L+P +
Sbjct: 1860 TIGCTSTVVGIGTIDGTQYIDVR-VAGTSTANNTIFLEPST 1899


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,368,310
Number of Sequences: 59808
Number of extensions: 421420
Number of successful extensions: 936
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)