Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0641
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   6.3  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   6.3  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   6.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   6.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 296 FEPSDIPVSESP*VVANGPSRALRCRRSG 382
           FEP  I  + +   +  GPS  L+C  SG
Sbjct: 391 FEPPQIRQAFAEETLQPGPSMFLKCVASG 419


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 493 MFSVNKALSGSSQRILFAERVPRRHR 570
           M S+   ++  S  +LF +R P  H+
Sbjct: 10  MVSITLVIAEESDNVLFDKRAPTGHQ 35


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 493 MFSVNKALSGSSQRILFAERVPRRHR 570
           M S+   ++  S  +LF +R P  H+
Sbjct: 10  MVSITLVIAEESDNVLFDKRAPTGHQ 35


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 493 MFSVNKALSGSSQRILFAERVPRRHR 570
           M S+   ++  S  +LF +R P  H+
Sbjct: 10  MVSITLVIAEESDNVLFDKRAPTGHQ 35


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 493 MFSVNKALSGSSQRILFAERVPRRHR 570
           M S+   ++  S  +LF +R P  H+
Sbjct: 10  MVSITLVIAEESDNVLFDKRAPTGHQ 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,363
Number of Sequences: 438
Number of extensions: 4018
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)