Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0641
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01510.1 68418.m00065 expressed protein contains Pfam domain,...    28   5.0  
At5g02310.1 68418.m00154 eceriferum3 protein, putative similar t...    27   8.8  

>At5g01510.1 68418.m00065 expressed protein contains Pfam domain,
           PF04884: Protein of unknown function, DUF647
          Length = 509

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 187 EGTGQQTSFELPVQLIGFPFIIMRCDSPTLLRNYPML 297
           E   ++  +E+  QLIG  F I+  D+P L++++P +
Sbjct: 275 EVAAKEEVWEVAAQLIGLGFGILIIDTPGLVKSFPFV 311


>At5g02310.1 68418.m00154 eceriferum3 protein, putative similar to
           eceriferum3 GI:1669655 from [Arabidopsis thaliana]
          Length = 2006

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 506 IKRSPDQA-KEYYLLSVFLGDIVGSPTLCHQLGKRMN 613
           +K+  D A K+Y LLS F   I+  PTL   L K MN
Sbjct: 330 VKQGTDNAFKKYPLLSTFSVQILTVPTLTPFLVKEMN 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,942,201
Number of Sequences: 28952
Number of extensions: 283001
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)