Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0639
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    33   0.041
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    30   0.38 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.2  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    25   8.2  

>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +2

Query: 248 KKIAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPTPETVPLRKTSIIQP 427
           +K+ +G+K+FDSGDY + K    +                G  IP+P+T+P R  S   P
Sbjct: 53  QKLQQGRKYFDSGDYALNKAGKAS---------DSGITCIGKEIPSPDTIPHRVVSAGSP 103

Query: 428 KYTTPSQTS*P 460
                  T  P
Sbjct: 104 NKEPSLHTKRP 114


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 326 QLSCLVSALPFDSRQNQRIFVPWLSFLQKC 237
           QL  ++    FD+RQ +++ + + SF QKC
Sbjct: 449 QLERMMDTQDFDARQGEKVGIEYRSFFQKC 478


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 524 VFYDVSSILTFCNCNVD 474
           VFY  S + T C+CN+D
Sbjct: 774 VFYSFSILETVCSCNLD 790


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 382 YS*NRTIKEDFHHSAKIHYTKSDILALYHYESTLQLQKVNI 504
           Y  N T K+   + A+I   K+ +   YH  S LQ   VN+
Sbjct: 217 YPINSTQKQQAKYEAEIEGYKAKLAGTYHEISVLQNTIVNV 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,454
Number of Sequences: 5004
Number of extensions: 44906
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)