Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0639
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57837| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_25974| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            30   2.2  
SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)                28   6.6  
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.7  

>SB_57837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/60 (40%), Positives = 31/60 (51%)
 Frame = +2

Query: 239 ISAKKIAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPTPETVPLRKTSI 418
           +  K++ K  K+FDSGDY MAK R  N                G  IPTP+ +P RKTS+
Sbjct: 57  VMRKRLQKRVKYFDSGDYMMAKSRDKN----PRGPVNPAVLAVGKGIPTPDKIPHRKTSV 112


>SB_25974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +1

Query: 295 NGKAETRQLSCTI*--GSSCTSKVAYW*CNPYS*NRTIKEDFHHSAKIHYTKSDILALYH 468
           NG   T+ ++CTI   G+     + +W  +    N TI  +      +H     + +L H
Sbjct: 46  NGTIITKLITCTILHTGTEMMYSLVHW--HKGELNGTIVTELITHTILHTVTEMMYSLVH 103

Query: 469 YESTLQLQKVNIEDTS*KTFIHYLHTGMYSVVYFH 573
           +    +L +  I +   +T +H     MYS+VY+H
Sbjct: 104 WHKG-ELNRTIITELITRTILHTGTEMMYSLVYWH 137


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +1

Query: 430 IHYTKSDILALYHYESTLQLQKVNIEDTS*KTFIHYLHTGMYSVVYFHFIISLRIKHRHI 609
           +H  +S  + + H   +L +  V++  +   T +H       ++V+ H  +S+ I H H 
Sbjct: 190 VHVHRSLSITIVHVHRSLSITIVHVHRSLSITIVHVNRPLSITIVHVHRSLSITIVHVHR 249

Query: 610 SKIIENLEVIILLST 654
           S  I  + V   LST
Sbjct: 250 SLSITIVHVHRSLST 264



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +1

Query: 430 IHYTKSDILALYHYESTLQLQKVNIEDTS*KTFIHYLHTGMYSVVYFHFIISLRIKHRHI 609
           +H  +S  + + H   +L    V++      T +H       ++V+ H  +S+ I H H 
Sbjct: 245 VHVHRSLSITIVHVHRSLSTTIVHVNRPLSITIVHVNRPLSITIVHVHRSLSITIVHVHR 304

Query: 610 SKIIENLEVIILLST 654
           S  I  + V   LST
Sbjct: 305 SLSITIVHVHRSLST 319


>SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)
          Length = 533

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 520 KTFIHYLHTGMYSVVYFHFIISLRIKHRHIS 612
           +  I+Y+H GM+S   +H + +LR   + +S
Sbjct: 323 RAIIYYVHYGMHSTACYHLLCALRDAFKCVS 353


>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +1

Query: 451  ILALYHYESTLQLQKVNIEDTS*KT------FIHYLHTGMYSVVYFHFIISLRIKHRHI 609
            +  LY Y S + L ++N+   S K       FI YL+  +  +VYF F+   R+  R I
Sbjct: 983  VTPLYVYLSIVTLSELNLVTISWKPRGFLLYFIFYLNYSLGPIVYFVFLDEFRLPLRSI 1041


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,470,588
Number of Sequences: 59808
Number of extensions: 311207
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)