Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0639
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07610.1 68418.m00872 F-box family protein similar to unknown...    30   1.8  
At3g27820.1 68416.m03470 monodehydroascorbate reductase, putativ...    28   7.1  
At2g13610.1 68415.m01500 ABC transporter family protein                28   7.1  

>At5g07610.1 68418.m00872 F-box family protein similar to unknown
           protein (emb|CAB85517.1)
          Length = 420

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -2

Query: 436 SVFWLNDGSLP*WYGFRSRDCIT 368
           SVFW  +G++  WYGF SRDC++
Sbjct: 237 SVFW--NGAVN-WYGFSSRDCLS 256


>At3g27820.1 68416.m03470 monodehydroascorbate reductase, putative
           similar to cytosolic monodehydroascorbate reductase
           GB:BAA77214 [Oryza sativa]
          Length = 488

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/40 (22%), Positives = 24/40 (60%)
 Frame = +1

Query: 397 TIKEDFHHSAKIHYTKSDILALYHYESTLQLQKVNIEDTS 516
           ++ ED++ +  + + K  +L  + ++S  ++  VN++D S
Sbjct: 208 SLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGS 247


>At2g13610.1 68415.m01500 ABC transporter family protein
          Length = 649

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 110 VAFFMYLLTGLLTSKIATKPLFIQ 39
           V  F ++LT LLTS I   P+F+Q
Sbjct: 423 VGLFAFILTFLLTSTIEALPIFLQ 446


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,085,362
Number of Sequences: 28952
Number of extensions: 222451
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)