Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0638
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    60   2e-10
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    30   0.39 
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    30   0.39 
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    29   0.90 
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    27   3.6  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   4.8  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.4  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   8.4  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
 Frame = +3

Query: 18  AKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQ---EMEEQHNAPIVQK 188
           AK   + +  L  Q+ E+  T+ GLE+ERDFYF KLR+IE++ Q            ++++
Sbjct: 174 AKQAQQQITSLETQLYEVNETMFGLERERDFYFNKLREIEILVQTHLTTSPMSMENMLER 233

Query: 189 ILDILYATEDGFAPPEEIDGDNLT 260
           I  ILY+TEDGF  P +   D  T
Sbjct: 234 IQAILYSTEDGFELPPDQPADLTT 257


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +3

Query: 147 QEMEEQHNAPIVQKILDILYATEDGFAPPEEIDGD-----NLTRQKRTNIE 284
           +E EE+H   + ++   I Y+    F P +E+DGD     N +R ++T+ E
Sbjct: 137 EESEEEHRPILRERTSRINYSVPLAFPPVDEMDGDPSSQVNQSRSRKTHSE 187


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 93  EKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATEDGFAPPEEIDGDNL 257
           EK+ DF F  L   EV   ++      P +   L+ LY ++DGF   ++I GD+L
Sbjct: 324 EKDNDFVFHDLVVKEVELPKISPLQALPPLP--LEKLYGSQDGFETAKKIVGDDL 376


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 15  SAKGDSKVVDEL-NHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEE---QHNAPIV 182
           S +GD  VVDE  N  I   K         R F    ++D+E I QE+E+   +HN P+ 
Sbjct: 208 SKRGDILVVDEACNFAIQ--KGIQISRTTIRYFKHNNMKDLERILQELEDDFVKHNRPLT 265

Query: 183 QKIL 194
           ++ +
Sbjct: 266 RRFI 269


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 542 WSRICYTFSLCIITFLNYV 598
           W+++  TF +C +TF  YV
Sbjct: 80  WAKLVVTFDICFLTFAVYV 98


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 45  ELNHQINELKATVDGLEKERDFYFGKLRD 131
           EL  +I ELK ++  +  E DF+  +LRD
Sbjct: 585 ELAQEIRELKMSILMVRTEMDFHLQELRD 613


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +3

Query: 39  VDELNHQINELKATVDGLEKERDFY-----FGKLRDIEVICQEMEEQHNAPIVQKIL 194
           +DEL +++  L  T     +E D Y       ++  + +  Q ++EQ NAP  Q+IL
Sbjct: 278 LDELLNKLKHLTLTHRWTLRETDLYVYRASLAEIDSMRIDGQFLDEQGNAPAGQRIL 334


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 30  SKVVDELNHQINELKATVDGL 92
           S+ +DELN+ I ELKA ++ +
Sbjct: 626 SESIDELNNNIEELKAQLNAI 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,646
Number of Sequences: 5004
Number of extensions: 57456
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)